Reply To: Homology modeling

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August 17, 2009 at 8:23 pm #4152
eprocko
Participant

    The error I am getting when running the following:

    /usr/local/rosetta3.0/bin/loopmodel.gcc.i686
    -database /usr/local/rosetta3.0/rosetta3_database
    -nstruct 2
    -in:file:fullatom
    -loops::input_pdb template.pdb
    -loops::loop_file loops.file
    -loops::frag_sizes 9 3
    -loops::frag_files aaquery09_05.200_v1_3 aaquery03_05.200_v1_3
    -out:file:fullatom

    is:

    “ERROR: Could not find disulfide partner for residue”