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August 18, 2009 at 5:49 pm
#4153
Anonymous
Do you have disulfides in your protein?
As of 3.0, the “detect_disulfides” flag defaults to true, you can try turning this to false, especially if you do not have disulfides.
There is a flag “fix_disulf” which lets you specify where you know the disulfides are – I’ve never used it and have no idea if it’s compatible with loop modeling.