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    Hi Ishita.
    I have a bit of experience with the software. Were you able to generate the files using the tutorial examples? I’ve found that if the chemical shifts are mis-referenced, or the chemical shift dispersion has a very wide range, or etc. etc. then the mfr program is not able to find fragments which correlate with your given shifts, and you will find that you have empty fragment files and receive this kind of error message.