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You can take a look at this and see if it helps. (I’m repeating this statement without really understanding it – I know nothing about mac compilation).
Barring that, you are correct, you need to determine which flag in release mode is causing problems and turn it off.
If ALL release binaries are causing problems, I can at least help you speed up the searching process. You can go into apps.src.settings and comment out (#) every app except one of your choice (I suggest fixbb), then go into protocols.src.settings and comment out pretty much every directory except jd2 and moves. That should leave you with an extremely stripped but still compileable version of just the fixbb app. I think you’ll have to recompile from scratch as you change flags, so this should help a lot with that. (If you use an app other than fixbb, you’ll need to change what’s commented out in protocols.src.settings)