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    “ERROR: Unable to open file: ./silent.out”


    I would guess you are running the test in a directory for which you do not have write permission.  Rosetta is saying it can’t write to that file; probably you don’t have write access to the directory you’re running in.




    “ERROR: Option matching -dock_mcm not found in command line top-level context”

    The documentation is out of date.  I believe dock_mcm is the default, so you no longer need to specify it.  If you’ll examine rosetta_source/test/integration/tests/docking instead, you’ll see that the option is commented out in the flags file for that test.