Reply To: ab inito memberane error

[Anonymous]

THX for kind reply.
It is still doesn’t work. Moreover, I found a test.blast in the directory, but it is empty…. and here is my log file:

---

Desktop/test> /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio//run_lips.pl test.fasta test.span /home/albert/install/rosetta-3.2/blast-2.2.24/bin/blastpgp /home/albert/install/rosetta-3.2/blast-db /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/alignblast.pl

Running:
/home/albert/install/rosetta-3.2/blast-2.2.24/bin/blastpgp -i test.fasta -d /home/albert/install/rosetta-3.2/blast-db -j 2 -h 0.001 -b5000 -v5000 -o test.blast
[blastpgp] WARNING: Unable to open blast-db.pin
[blastpgp] WARNING: Unable to open blast-db.pin
Error in alignblast.pl: blast output file test.blast truncated:
readline() on closed filehandle MSA at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio//run_lips.pl line 91.
4 2 2
5 0 0
3 5 5
0 5 5
6 4 4
4 2 2
2 4 4