Reply To: ab inito memberane error

[Anonymous]

THX for kind reply.
I renamed the folder to “nr” and run it again, it works now but there are still many wanning messages:

/home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl test.fasta test.span /home/albert/install/rosetta-3.2/blast-2.2.24/bin/blastpgp /home/albert/install/rosetta-3.2/nr /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/alignblast.pl
Running:
/home/albert/install/rosetta-3.2/blast-2.2.24/bin/blastpgp -i test.fasta -d /home/albert/install/rosetta-3.2/nr -j 2 -h 0.001 -b5000 -v5000 -o test.blast
[blastpgp] WARNING: Unable to open nr.pin
[blastpgp] WARNING: Unable to open nr.pin
[blastpgp] WARNING: [000.000] Unable to open nr.pin
Can’t exec “/bin/sh”: Argument list too long at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 127.
Use of uninitialized value $data in print at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 129.
Use of uninitialized value $data in split at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 165.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 201.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 202.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 206.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 206.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 206.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 206.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 206.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 206.
Use of uninitialized value within @resnum in array dereference at /home/albert/install/rosetta-3.2/source/src/apps/public/membrane_abinitio/run_lips.pl line 206.
3 5 5
5 3 2
0 2 2
0 5 5
4 6 6
2 4 4