Reply To: Problem with symmetric docking

[Anonymous]

I went back and checked, and I was mistaken. Apparently this structure also fails normal docking, though I don’t know why. This structure is actually a trimer of trimers, so what I had done was renumber the three subunits of the first trimer so that there was no overlap in numbers and then concatenate them into one chain. I then tried to use symmetry dock on this chain to generate the second trimer, and that’s where it failed. I suspect something in my method for concatenating the three proteins is wrong.