abnitio in only part of pdb and map fitting

Member Site › Forums › Rosetta 3 › Rosetta 3 – General › abnitio in only part of pdb and map fitting

Viewing 0 reply threads
  • Author
    Posts
    • December 15, 2014 at 4:57 pm #2102
      Anonymous

        Hi,
        I´m trying to model a 2 domain protein with a ~140 aa long semi-flexible linker. We have a general idea of relative orientation of the two domains.

        Some questions:

        1) Is there a way of inserting fragments in only the linker and allowing translational and/or rotational movements in both domains, keeping the internal “rigidity” of both domains (its structure is solved)? Using topology broker? Rosetta scripts?
        2) I then want fit the centroid and/or full-atom structures in a open and closed conformation to a saxs map (i know were both domains are situated in that map). Is is possible? Using the EM-fold or density fitting tutorials could help me?

        thanks in advance,

        Tiago

    • Author
      Posts
    Viewing 0 reply threads
    • You must be logged in to reply to this topic.