- This topic has 8 replies, 6 voices, and was last updated 2 years, 6 months ago by
.
-
-
-
-
-
-
-
-
-
Howdy Everyone!
I hope all is well, I’m a research intern at UNMC (University of Nebraska Medical Center), and after reading this article I was curious on running the algorithm myself. However, I ran into an error on line 632 of the, “protein_mimic_designer_r2_00b_libs.py”.
The error reads:
ValueError: Invalid shape in the fixed-type tuple.
After looking around on stack overflow I wasn’t able to find anything that could fix the issue, I’m hoping someone can help me with what I’m missing
I’m using python3.7 to run the script— I converted both scripts from python 2 to 3 using the “2to3” package— and am running this on a MacBook 2017. I will attach a photo below of the error and corresponding part of the pyrosetta script.
Thank you so much for your time in advance, and I look forward to working with this algorithm some more
The corresponding python script the error refers too:
def get_fragment_entry_dtype(num_fragment_atoms):
frag_size=num_fragment_atoms/len(atom_types_arr)
return np.dtype([(“assignment”, np.int),
(“size”, np.int),
(“avg_distance”, np.float),
(“threshold_distance”, np.float),
(“cordinates”, np.float, (num_fragment_atoms, 3)),
(“bb”, np.float, (frag_size, 3)),
(“ss”, np.float, (frag_size, 3)),
(“aa”, np.float, (frag_size, 20)),
(“aa_w”, np.float, (frag_size, 20))]) (line 632)
-
- You must be logged in to reply to this topic.