about the option -constraints:cst_fa_file & -constraints:cst_fa_weight

[Anonymous]

I didn’t find the descriptions of these two options. Is there any documentations about it? What does -constraints:cst_fa_weight mean? Thanks~

[Anonymous]

They do the same thing as regular cst_file and cst_weight: specify a constraint file and constraint weight. The difference is that they are only used in a handful of places.

Generally, try cst_file and cst_weight first. If they don’t work, you can try these. You can also just grep through the code to find the handful of instances where these options are used:


19:48:15 somarriba ~/LOCAL/rosetta-3.1/rosetta_source/src> codesearch add_fa_constraints_from_cmdline
apps/public/backrub.cc:252: core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn(*score_fxn);
apps/public/backrub.cc:300: core::scoring::constraints::add_fa_constraints_from_cmdline_to_pose(*input_pose);
apps/public/score_jd2.cc:72: // core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn( *sfxn_ );
apps/public/score.cc:158: core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn( *sfxn );
core/scoring/constraints/util.cc:219:void add_fa_constraints_from_cmdline_to_pose( core::pose::Pose & pose ) {
core/scoring/constraints/util.cc:229:void add_fa_constraints_from_cmdline_to_scorefxn( core::scoring::ScoreFunction &scorefxn_ ) {
core/scoring/constraints/util.cc:241:void add_fa_constraints_from_cmdline(
core/scoring/constraints/util.cc:245: add_fa_constraints_from_cmdline_to_pose( pose );
core/scoring/constraints/util.cc:246: add_fa_constraints_from_cmdline_to_scorefxn( scorefxn_ );
core/scoring/constraints/util.hh:108: void add_fa_constraints_from_cmdline_to_pose( core::pose::Pose & pose );
core/scoring/constraints/util.hh:111: void add_fa_constraints_from_cmdline_to_scorefxn(
core/scoring/constraints/util.hh:115: void add_fa_constraints_from_cmdline(
protocols/relax/util.cc:113: core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn( *scorefxn );
protocols/loops/LoopRelaxMover.cc:600: core::scoring::constraints::add_fa_constraints_from_cmdline(
protocols/loops/LoopRelaxMover.cc:604: core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn(
protocols/flxbb/FlxbbDesign_main.cc:52: scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn( *scorefxn_relax );
protocols/abinitio/IterativeFullatom.cc:120: // core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn( *scorefxn );
protocols/abinitio/AbrelaxApplication.cc:2223: add_fa_constraints_from_cmdline( pose, *scorefxn );
protocols/jobdist/standard_mains.cc:429: if( the_pose->is_fullatom() ) core::scoring::constraints::add_fa_constraints_from_cmdline_to_pose( *the_pose );
protocols/jobdist/standard_mains.cc:596: if( the_pose->is_fullatom() ) core::scoring::constraints::add_fa_constraints_from_cmdline_to_pose( *the_pose );
protocols/evaluation/util.cc:261: core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn( *scfxn );

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