Alanine Scanning of UbcH7- E6AP Interface

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    • March 23, 2009 at 10:58 pm #334
      Anonymous

        Hi,

        I am new to Rosetta.
        I would like to try the Alanine scanning example under the heading Design of Protein Protein Interactions – available at http://www.rosettacommons.org/tiki/tiki-index.php?page=Quick+Start&highlight=prepack#Prepacking_the_Starting_Structures

        I did not find the trimmed down version of 1c4z.pdb structure file in the Rosetta 2.0, 2.1.1 or 2.3.0

        Could someone please let me know where is it located. I can as well download the structure from PDB but would like to follow the example for my understanding.

        I will appreciate any help in this regard.

        Thank you.

      • April 15, 2009 at 9:29 pm #4068
        Anonymous

          Hi,

          You can find the trimmed version of 1c4z.pdb in RosettaExamples/RosettaUserGuide/AlanineScanExample/ which can be downloaded from the software section of rosettacommons.

          Regards,
          Kristian

          > Hi,
          >
          > I am new to Rosetta.
          > I would like to try the Alanine scanning example under the heading Design of Protein Protein Interactions – available at http://www.rosettacommons.org/tiki/tiki-index.php?page=Quick+Start&highlight=prepack#Prepacking_the_Starting_Structures
          >
          > I did not find the trimmed down version of 1c4z.pdb structure file in the Rosetta 2.0, 2.1.1 or 2.3.0
          >
          > Could someone please let me know where is it located. I can as well download the structure from PDB but would like to follow the example for my understanding.
          >
          > I will appreciate any help in this regard.
          >
          > Thank you.

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