- This topic has 2 replies, 2 voices, and was last updated 8 years, 6 months ago by Anonymous.
May 29, 2015 at 7:15 am #2206Anonymous
I am doing research on affinity maturation of antibody and using Rosetta-antibody package. for modelling of my antibodies, I installed Rosetta 2015.12 but when I run the command of RossetaAntibody3 :
[./antibody.py –light-chain CVL.fasta –heavy-chain CVH.fasta –superimpose-profit ~/antibody-modeling/ProFitV3.1/src/profit –blast /home/mary/antibody-modeling/ncbi-blast-2.2.30+/bin/blastp –blast-database /home/mary/antibody-modeling/rosetta15-12/tools/antibody/blast_database/ –antibody-database /home/mary/antibody-modeling/rosetta15-12/tools/antibody/antibody_database –rosetta-bin /home/mary/antibody-modeling/rosetta15-12/main/source/bin/ –rosetta-database /home/mary/antibody-modeling/rosetta15-12/main/database –rosetta-platform linuxgccrelease]
, I faced with the below error:
[ERROR] Exception caught by JobDistributor for job FR_0001CCDLoopClosureMover::get_anchors( core::conformation::Residue const & residue ): Residue is not a cutpoint variant! You must add cutpoint variants before applying this Mover.
01 reported that its input was bad and will not retry
protocols.jd2.FileSystemJobDistributor: job failed, reporting bad input; other jobs of same input will be canceled: FR_0001
protocols.jd2.JobDistributor: no more batches to process…
protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 7 seconds
caught exception 1 jobs failed; check output for error messages
Rosetta run terminated with Error!
I will be appreciated if anyone could help me to solve the error.
May 29, 2015 at 2:39 pm #11030Anonymous
It’s a known issue that hopefully should be fixed by now (https://www.rosettacommons.org/node/9405)
Try downloading and installing the latest weekly release of Rosetta and see if that helps.
June 1, 2015 at 7:04 am #11034Anonymous
Thank you very much for your help.
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