Clustering TM domain of transmembrane protein

Member Site Forums Rosetta 3 Rosetta 3 – General Clustering TM domain of transmembrane protein

Viewing 0 reply threads
  • Author
    • #487


        I have a trouble when clustering decoys of a transmembrane protein.

        I use the MembraneAbinitio protocol to generate 5,000 decoys. Now I attempt to cluster them only considering the trans-membrane segments because my target protein has a very large (120 residues) cytoplasmic domain.
        I notice that there is an option for clustering– “exclude_res”. I wonder how this option works? As you can see, I have more than 120 residues to exclude?

        Anyone can help me?

        Thank you a lot!

    Viewing 0 reply threads
    • You must be logged in to reply to this topic.