Member Site Forums Rosetta 3 Rosetta 3 – General Custom fold tree

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    • #2155

        What is the best way to define a custom fold tree?
        I find that -auto_setup_metals does not work for me and I’d like to set up my fold tree manually.


      • #10915

          If you’re using RosettaScripts, you can specify the fold tree with the AtomTree mover (

          If you’re using another protocol, you’ll have to look for protocol-specific options to specify the fold tree. In general, there isn’t a way to specify an arbitrary fold tree. (Although some protocols will obey an input foldtree from a silent file, so you could create a silent file with a particular foldtree with RosettaScripts and the AtomTree mover, and then use that silent file as input instead of the PDB.)

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