Member Site Forums Rosetta 3 Rosetta 3 – General Custom fold tree

  • This topic has 1 reply, 2 voices, and was last updated 9 years ago by Anonymous.
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    • #2155
      Anonymous

        What is the best way to define a custom fold tree?
        I find that -auto_setup_metals does not work for me and I’d like to set up my fold tree manually.

        Thanks!

      • #10915
        Anonymous

          If you’re using RosettaScripts, you can specify the fold tree with the AtomTree mover (https://www.rosettacommons.org/docs/latest/protein-interface-design-movers.html#AtomTree)

          If you’re using another protocol, you’ll have to look for protocol-specific options to specify the fold tree. In general, there isn’t a way to specify an arbitrary fold tree. (Although some protocols will obey an input foldtree from a silent file, so you could create a silent file with a particular foldtree with RosettaScripts and the AtomTree mover, and then use that silent file as input instead of the PDB.)

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