Distance constraints for amino acids pairs

Member Site Forums PyRosetta PyRosetta – General Distance constraints for amino acids pairs

  • This topic has 0 replies, 1 voice, and was last updated 14 years ago by Anonymous.
Viewing 0 reply threads
  • Author
    • #587


        I have a rough model of my target Protein in which I want to dock a (small) polypeptide.

        I have some information about the protein structure via Cross-Linking experiments and want to apply them while generating the decoys.

        Lets say I know that there is a distance of 10A between the C-Alphas of amino acid 1 and 15

        Can I pass this information somehow, or do I have to check each decoy that the distance between my amino acids is in an acceptable range?

        Ahh, I should tell you that I am totaly new to rosetta and just read the tutorial and manual, I could have missed the one or other hint about that.

        Kind regards

    Viewing 0 reply threads
    • You must be logged in to reply to this topic.