Hello,
I’ve been using PyRosetta’s pre-packed protocols like ClassicRelax, FastRelax and LoopMover_Refine_CCD thoroughly, but I’ve been unable to find documentation of these. I would like to know which steps are taken by these protocols in order to complete their tasks; if such information is available, could someone link me to it?
In Workshop #5: PyRosetta Refinement, it is pointed that ClassicRelax is the standard Rosetta refinement protocol, similar to this one (http://www.sciencemag.org/content/309/5742/1868.long); finding a paper describing the other protocols would be very nice.
Thanks.