ERROR: filtered_alignments.size() > 0

This topic has 2 replies, 2 voices, and was last updated 12 years, 8 months ago by Anonymous.

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- January 17, 2012 at 9:28 pm #1140
  Anonymous
  I’ve been successfully running comparative modeling jobs, but when I tried a new template pdb, I got the following error:
  
  ERROR: filtered_alignments.size() > 0
  ERROR:: Exit from: src/protocols/comparative_modeling/CMPoseInputStream.cc line: 167
  
  and the program stops.
  
  I am having the darndest time trying to debug this. Has anyone run across this error before?
  
  Thanks,
  -jhbrown
- January 17, 2012 at 9:44 pm #6535
  Anonymous
  The code that spits that error is trying to do some string name matching of the four-character PDB stem of a template pose versus whatever’s being aligned. I would guess you’ve got a line in your alignments with the wrong PDB name (doesn’t match the PDB file names, maybe? It appears to be matching on the first four characters.).
  
  There are some “debug” level output statements nearby, re-running with the verbosity level high may help. (I think that’s flag -out:level 500 but I’m not sure.)
- January 18, 2012 at 2:00 pm #6537
  Anonymous
  You guessed right! Thanks so much.
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