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Dear Rossetta Users,
when I run Flexpepdock protocol, the error is : “ERROR: seqpos <= size()
ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289:.
Can someone here explain why this happenned?
I attach the input file below.
Can you attach your command line with any flags that you used? Does the result change at all if you remove the zinc ion?
I removed Zinc, but the error still return (same above)
This is the flag for running prepack before running Flexpepdock protocol
I got starting structure from Molecular Dynamics simulation.
Thank a lot and best regard
Your “occupancy” column in the PDB is zero, which means Rosetta will ignore those atoms by default. (Leading to an empty structure.)
Use the option “-ignore_zero_occupancy false” to override this behavior and use all the atom coordinates specified in the PDB.
Thank a lot for your help. It work now