Hi,
I get an error below with profit being called on profit.in
Scan one or more sequences with a simple frequency matrix
Profile or weight matrix file: Error: Unable to open file ‘QUIET’ for input
Profile or weight matrix file: Error: Unable to open file ‘ZONE CLEAR’ for input
Died: profit terminated: Bad value for ‘-infile’ and no more retries
256 at /home/…/immunity/antibody/scripts/ram_buildloop_wrapper4.pl line 12
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The contents of profit.in (below), don’t seem to match the expected input for profit.
QUIET
ZONE CLEAR
ATOMS CA
templatelightheavy.pdb queryL.pdb
reference templatelightheavy.pdb
mobile queryL.pdb
ZONE L4-L6
ZONE L10-L23
ZONE L35-L38
ZONE L45-L49
ZONE L57-L66
ZONE L71-L88
ZONE L98-L104
fit
WRITE queryLfitted.pdb
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Thanks!
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