fragment for polyAAA

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    • November 29, 2010 at 4:23 pm #704
      Anonymous

        I am working on the Pyrosetta tutorial and I am trying to use protein fragments. Howevere there is a problem since the Robetta server keep on failing.
        I am submitting this fasta file.

        >poly_
        AAAAAAAAAAAAAAAAAA

        Is there anything wrong with my fasta format-

        Knut J

      • December 2, 2010 at 2:36 pm #4677
        Anonymous

          A) Have you tried contacting the Robetta webmaster?

          B) Can you post more details on what error message it gives?

          I would guess either your sequence is too short, or it refuses to make fragments for a “test” sequence. The only realistic fragments would be helical anyway.

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