getting Rosetta to work with Phenix

[Anonymous]

I am trying to get Rosetta to work with Phenix phenix-1.7.3-928. But first I need to
get rosetta compiled. It does not compile without an error.I start with:

[rosetta@paprika ~/Desktop]$ python -V
Python 2.6.6

python scons.py bin mode=release

and it runs for a while and then:

g++ -o build/src/release/linux/2.6/64/x86/gcc/protocols/nonlocal/NonlocalAbinitioReader.os -c -isystem external/boost_1_46_1/boost/ -isystem external/boost_1_46_1/boost/ -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -fPIC -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_46_1 -Iexternal/dbio -I/usr/local/include -I/usr/include src/protocols/nonlocal/NonlocalAbinitioReader.cc
src/protocols/nonlocal/NonlocalAbinitioReader.cc: In static member function ‘static void protocols::nonlocal::NonlocalAbinitioReader::read(const std::string&, utility::vector1 >*)’:
src/protocols/nonlocal/NonlocalAbinitioReader.cc:112: internal compiler error: Segmentation fault
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://bugzilla.redhat.com/bugzilla> for instructions.
Preprocessed source stored into /tmp/ccUmFWht.out file, please attach this to your bugreport.
scons: *** [build/src/release/linux/2.6/64/x86/gcc/protocols/nonlocal/NonlocalAbinitioReader.os] Error 1
scons: building terminated because of errors.

Does this look like a gcc problem, a python problem, or a Rosetta problem.

My system is a RHEL6.2 X86_64 system.

Linux paprika 2.6.32-220.4.2.el6.x86_64 #1 SMP Mon Feb 6 16:39:28 EST 2012 x86_64 x86_64 x86_64 GNU/Linux

[rosetta@paprika rosetta_source]$ gcc -v
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure –prefix=/usr –mandir=/usr/share/man –infodir=/usr/share/info –with-bugurl=http://bugzilla.redhat.com/bugzilla –enable-bootstrap –enable-shared –enable-threads=posix –enable-checking=release –with-system-zlib –enable-__cxa_atexit –disable-libunwind-exceptions –enable-gnu-unique-object –enable-languages=c,c++,objc,obj-c++,java,fortran,ada –enable-java-awt=gtk –disable-dssi –with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre –enable-libgcj-multifile –enable-java-maintainer-mode –with-ecj-jar=/usr/share/java/eclipse-ecj.jar –disable-libjava-multilib –with-ppl –with-cloog –with-tune=generic –with-arch_32=i686 –build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.6 20110731 (Red Hat 4.4.6-3) (GCC)

Do I have the wrong OS?

thanks

[Anonymous]

http://www.rosettacommons.org/content/rosetta-33-installation-failed-segmentation-fault

http://www.rosettacommons.org/content/rosetta33-compile-error

http://www.rosettacommons.org/content/rosetta-33-build-error-rhel-61

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