Having trouble producing a .pdb file from a silent output file after running abinitio relax

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    • March 9, 2011 at 8:48 pm #819
      Anonymous

        Well I have run AbinitioRelax.linuxgccrelease for the first time and had it produce a t000_silent.out file. The documentation says to use score.linuxgccrelease but that no longer exists in rosetta 3.2. What do I need to do to get .pdb files from the silent output file? Thanks.

      • March 9, 2011 at 8:59 pm #5143
        Anonymous

          Silent files are such a pain.

          Try score_jd2 or extract_pdbs. (I think the sole purpose of extract_pdbs is this).

        • March 9, 2011 at 10:25 pm #5146
          Anonymous

            Thanks, I tried extract_pdbs and that worked.

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