After low-res docking,I’m going to do high-res protein/protein docking.There are two modes(High Resolution Docking Only;High Resolution Docking minimization)in the rosetta3.4 user guide.Which one should I choose?
Here is my flags:
1.High-res docking only flags
Thanks for kind comments!
In the high-res docking,I use high-res docking only flags to repack sidechains followed by high-res docking minimization to minimize the energy of the rigid body position.Does this make sense?
Also,is there something wrong with my high-res docking minimization flags?