How to build a parallel version of rosetta++ (Rosetta2.3.0) ?

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- March 26, 2011 at 5:20 am #842
  Anonymous
  Hi Rosetta users,
  
  I’m using Rosetta 2.3.0. I want to build a parallel version. I installed MPICH and scons and modified some lines of basic.setting which is in rosetta++/tools/build/. I added the mpi bin, include amd lib path to the file and added a flag “Wno-long-long” to make mpicc and mpiCC work (since the cpmpiler always complains about that it doesn’t support ‘long long’ type). I also installed the rsh-version and configured it to make the work.
  
  My PC is a HP laptop (1 intel CORE2 cpu, 2 cores); my OS is Ret Hat Enterprise Linux 5.4; scons works fine when building a normal version rosetta++; mpich 1.2.7 is used; rsh-server-0.17-40.el5.i386.rpm is used (I created a file named hosts.equiv in /etc/, and put a line “localhost” in it. In the end, I reboot the rsh service).
  
  #########################
  
  scons ./bin mode=relese extras=mpi
  
  #########################
  
  Finally, I got a parallel version rosetta. After that, I tested the parallel version, like this:
  
  (A)
  mpirun -np 3 /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
  
  OR like this
  
  (
  mpirun -np 3 /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
  
  I found 3 rosetta.release processes at once, however, only one of them left after a short while. In (A), only the server node left; in (, only the last node, i.e. here, the client 2 left to run. Below are parts of my log files (I also put them in a the attachments, however, you’ve to rename them after downloading and to unzip them.).
  
  Anybody can tell me how I can fix these? I relly need Rosetta 2.3.0 to run in parallel. Thanks in advance!!!
  
  Ming Liu, Ph.D from Beijing, China
  
  ###################################
  Log files !!!!!!!!!!!!!!!!
  
  ####################### The server node ####################
  ####################### This log file was gererated by calling the command ( ############################
  this node is the server
  command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
  [T/F OPT]Default FALSE value for [-no_option_display]
  [T/F OPT]Default FALSE value for [-args_file]
  [STR OPT]Default value for [-paths] paths.txt.
  [T/F OPT]Default FALSE value for [-version]
  [T/F OPT]Default FALSE value for [-score]
  [T/F OPT]Default FALSE value for [-abinitio]
  [T/F OPT]Default FALSE value for [-refine]
  [T/F OPT]Default FALSE value for [-assemble]
  [T/F OPT]Default FALSE value for [-idealize]
  [T/F OPT]Default FALSE value for [-relax]
  [T/F OPT]Default FALSE value for [-abrelax]
  [T/F OPT]Default FALSE value for [-abrelax_mode]
  [T/F OPT]Default FALSE value for [-design]
  [T/F OPT]Default FALSE value for [-dock]
  [T/F OPT]Default FALSE value for [-membrane]
  [T/F OPT]Default FALSE value for [-loops]
  [T/F OPT]Default FALSE value for [-pdbstats]
  [T/F OPT]New TRUE value for [-interface]
  [T/F OPT]Default FALSE value for [-fake_native]
  [T/F OPT]Default FALSE value for [-docking_hb_stats]
  [T/F OPT]Default FALSE value for [-output_position_hetatm]
  [T/F OPT]Default FALSE value for [-ddg_bind_only]
  [STR OPT]New value for [-mutlist] sample_mutlist_all.
  [STR OPT]Default value for [-intout] INT.OUT.
  [T/F OPT]Default FALSE value for [-Wpack_only]
  [T/F OPT]Default FALSE value for [-Wint_only]
  [T/F OPT]Default FALSE value for [-pmut_scan]
  [T/F OPT]Default FALSE value for [-affin_incr]
  [T/F OPT]Default FALSE value for [-ala_scan_only]
  [T/F OPT]Default FALSE value for [-monomeric_protein]
  [T/F OPT]Default FALSE value for [-safe]
  [T/F OPT]Default FALSE value for [-output_structure]
  [T/F OPT]Default FALSE value for [-repack_neighbors]
  [T/F OPT]Default FALSE value for [-min_interface]
  [T/F OPT]Default FALSE value for [-relax_unbound]
  [T/F OPT]Default FALSE value for [-alter_spec_format]
  [T/F OPT]Default FALSE value for [-chain_energies]
  Rosetta mode: interface
  [T/F OPT]Default FALSE value for [-chain]
  [T/F OPT]Default FALSE value for [-protein]
  [T/F OPT]Default FALSE value for [-series]
  [INT OPT]Default value for [-nstruct] 1
  [T/F OPT]Default FALSE value for [-concatenate_pdbs]
  [T/F OPT]Default FALSE value for [-single_silent_writer]
  [T/F OPT]Default FALSE value for [-read_all_chains]
  [T/F OPT]Default FALSE value for [-preserve_header]
  [T/F OPT]Default FALSE value for [-use_pdb_numbering]
  [T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
  [T/F OPT]Default FALSE value for [-repack]
  [T/F OPT]Default FALSE value for [-no_optH]
  [T/F OPT]Default FALSE value for [-overwrite]
  [T/F OPT]Default FALSE value for [-output_pdb_gz]
  [T/F OPT]Default FALSE value for [-output_silent_gz]
  [T/F OPT]Default FALSE value for [-output_scorefile_gz]
  [T/F OPT]Default FALSE value for [-pose_silent_out]
  [T/F OPT]Default FALSE value for [-sasapack_bvalues]
  [T/F OPT]Default FALSE value for [-cenlist_values]
  [T/F OPT]Default FALSE value for [-termini]
  [T/F OPT]Default FALSE value for [-Nterminus]
  [T/F OPT]Default FALSE value for [-Cterminus]
  [T/F OPT]Default FALSE value for [-use_trie]
  [T/F OPT]Default FALSE value for [-no_trie]
  [T/F OPT]Default FALSE value for [-use_conformer]
  [T/F OPT]Default FALSE value for [-use_bbind_conformer]
  [T/F OPT]Default FALSE value for [-trials_trie]
  [T/F OPT]Default FALSE value for [-no_trials_trie]
  [T/F OPT]Default FALSE value for [-pose_relax]
  [T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
  [T/F OPT]Default FALSE value for [-read_interaction_graph]
  [T/F OPT]Default FALSE value for [-write_interaction_graph]
  [STR OPT]Default value for [-ig_file] .
  [T/F OPT]Default FALSE value for [-packer_precompute_only]
  [T/F OPT]Default FALSE value for [-tight_memory_restrictions]
  [T/F OPT]Default FALSE value for [-lazy_ig]
  [T/F OPT]Default FALSE value for [-linmem_ig]
  [T/F OPT]Default FALSE value for [-minimalist_ig]
  [T/F OPT]Default FALSE value for [-use_sasa_pack_score]
  [T/F OPT]Default FALSE value for [-output_dot_kinemage]
  [T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
  [T/F OPT]Default FALSE value for [-multi_cool_annealer]
  [T/F OPT]Default FALSE value for [-debug_annealer_design]
  [T/F OPT]Default FALSE value for [-no_his_his_pairE]
  [T/F OPT]Default FALSE value for [-silent_input]
  [T/F OPT]Default FALSE value for [-skip_scorefile_check]
  [T/F OPT]Default FALSE value for [-timer]
  [T/F OPT]Default FALSE value for [-count_attempts]
  [T/F OPT]Default FALSE value for [-status]
  [T/F OPT]Default FALSE value for [-decoy_status]
  [T/F OPT]Default FALSE value for [-ise_movie]
  [T/F OPT]Default FALSE value for [-output_all]
  [T/F OPT]Default FALSE value for [-output_chi_silent]
  [T/F OPT]Default FALSE value for [-accept_all]
  [T/F OPT]Default FALSE value for [-skip_missing_residues]
  [T/F OPT]Default FALSE value for [-use_input_sc]
  [T/F OPT]Default FALSE value for [-use_input_cb]
  [STR OPT]Default value for [-weightfile] none.
  [STR OPT]Default value for [-cst] cst.
  [STR OPT]Default value for [-dpl] dpl.
  [STR OPT]Default value for [-resfile] none.
  [STR OPT]Default value for [-equiv_resfile] none.
  [T/F OPT]Default FALSE value for [-auto_resfile]
  [T/F OPT]Default FALSE value for [-chain_inc]
  WARNING::
  constraints will not be used: query not defined
  by series_code,protein_name,and chain_id
  WARNING:: nstruct > 0 but output_coord F
  no pdb files will be output
  [T/F OPT]Default FALSE value for [-full_filename]
  [T/F OPT]Default FALSE value for [-map_sequence]
  [INT OPT]Default value for [-max_frags] 200
  [T/F OPT]Default FALSE value for [-output_centroids]
  [STR OPT]Default value for [-protein_name_prefix] .
  [STR OPT]Default value for [-frags_name_prefix] .
  [T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
  [T/F OPT]Default FALSE value for [-use_homolog_env_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-output_hbond_info]
  [T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
  [T/F OPT]Default FALSE value for [-monomer_input]
  [REAL OPT]Default value for [-vdw_reweight] 1
  [REAL OPT]Default value for [-env_reweight] 1
  [REAL OPT]Default value for [-pair_reweight] 1
  [REAL OPT]Default value for [-cb_reweight] 1
  [REAL OPT]Default value for [-sheet_reweight] 1
  [REAL OPT]Default value for [-ss_reweight] 1
  [REAL OPT]Default value for [-hs_reweight] 1
  [REAL OPT]Default value for [-rsigma_reweight] 1
  [REAL OPT]Default value for [-rg_reweight] 1
  [REAL OPT]Default value for [-pc_reweight] 1
  [REAL OPT]Default value for [-fa_atr_reweight] 1
  [REAL OPT]Default value for [-fa_rep_reweight] 1
  [REAL OPT]Default value for [-fa_dun_reweight ] 1
  [REAL OPT]Default value for [-fa_pair_reweight] 1
  [REAL OPT]Default value for [-fa_plane_reweight] 1
  [REAL OPT]Default value for [-fa_solv_reweight] 1
  [REAL OPT]Default value for [-fa_ref_reweight ] 1
  [REAL OPT]Default value for [-fa_pH_reweight] 1
  [REAL OPT]Default value for [-fa_h2o_reweight] 1
  [REAL OPT]Default value for [-fa_prob1b_reweight] 1
  [REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
  [REAL OPT]Default value for [-hb_srbb_reweight] 1
  [REAL OPT]Default value for [-hb_lrbb_reweight] 1
  [REAL OPT]Default value for [-hb_sc_reweight] 1
  [REAL OPT]Default value for [-chainbreak_reweight] 1
  [REAL OPT]Default value for [-electron_density_reweight] 1
  [REAL OPT]Default value for [-dummy_model_reweight] 1
  [REAL OPT]Default value for [-saxs_model_reweight] 1
  [REAL OPT]Default value for [-Wplane_total] 0
  [REAL OPT]Default value for [-barcode_reweight] 1
  [REAL OPT]Default value for [-barcode_energy_reweight] 1
  [T/F OPT]Default FALSE value for [-fa_max_dis]
  [T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
  [T/F OPT]Default FALSE value for [-no_hb_env_dep]
  [T/F OPT]Default FALSE value for [-find_disulf]
  [T/F OPT]Default FALSE value for [-fix_disulf]
  [T/F OPT]Default FALSE value for [-prna]
  [T/F OPT]Default FALSE value for [-enable_dna]
  [T/F OPT]Default FALSE value for [-enable_rna]
  [T/F OPT]Default FALSE value for [-dna_interface]
  [T/F OPT]Default FALSE value for [-enable_ligand_aa]
  [T/F OPT]Default FALSE value for [-phospho_ser]
  [T/F OPT]Default FALSE value for [-surface]
  [T/F OPT]Default FALSE value for [-loops]
  [T/F OPT]Default FALSE value for [-taboo]
  [T/F OPT]Default FALSE value for [-vary_omega]
  [T/F OPT]Default FALSE value for [-fine_hb_categories]
  [T/F OPT]Default FALSE value for [-geometric_sol]
  [T/F OPT]Default FALSE value for [-ex1]
  [T/F OPT]Default FALSE value for [-ex2]
  [T/F OPT]Default FALSE value for [-ex3]
  [T/F OPT]Default FALSE value for [-ex4]
  [T/F OPT]Default FALSE value for [-ex1aro]
  [T/F OPT]Default FALSE value for [-ex1aro_half]
  [T/F OPT]Default FALSE value for [-ex2aro_only]
  [T/F OPT]Default FALSE value for [-ex1aro_exposed]
  [T/F OPT]Default FALSE value for [-ex2aro_exposed]
  [T/F OPT]Default FALSE value for [-exOH]
  [INT OPT]Default value for [-extrachi_cutoff] 18
  [T/F OPT]Default FALSE value for [-rot_pert]
  [T/F OPT]Default FALSE value for [-rot_pert_input]
  [T/F OPT]Default FALSE value for [-exdb]
  [T/F OPT]Default FALSE value for [-rotamer_explosion]
  [T/F OPT]Default FALSE value for [-min_best_rots]
  [T/F OPT]Default FALSE value for [-rot_opt]
  [T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
  [T/F OPT]Default FALSE value for [-explicit_h2o]
  [T/F OPT]Default FALSE value for [-solvate]
  [T/F OPT]Default FALSE value for [-pH]
  [T/F OPT]Default FALSE value for [-try_both_his_tautomers]
  [T/F OPT]Default FALSE value for [-hydrate_dna]
  [T/F OPT]Default FALSE value for [-ex_dna_waters]
  [T/F OPT]Default FALSE value for [-minimize_rot]
  [T/F OPT]Default FALSE value for [-read_hetero_h2o]
  [T/F OPT]Default FALSE value for [-Wint_score_only]
  [T/F OPT]Default FALSE value for [-Wint_repack_only]
  [T/F OPT]Default FALSE value for [-ligand]
  [T/F OPT]Default FALSE value for [-enzyme_design]
  [T/F OPT]Default FALSE value for [-score_contact_flag]
  [T/F OPT]Default FALSE value for [-score_contact_weight]
  [T/F OPT]Default FALSE value for [-score_contact_threshold]
  [T/F OPT]Default FALSE value for [-scorefxn]
  default centroid scorefxn: 4
  default fullatom scorefxn: 12
  [INT OPT]Default value for [-run_level] 0
  [T/F OPT]Default FALSE value for [-silent]
  [T/F OPT]Default FALSE value for [-output_silent_gz]
  [T/F OPT]Default FALSE value for [-verbose]
  [T/F OPT]Default FALSE value for [-gush]
  [T/F OPT]Default FALSE value for [-yap]
  [T/F OPT]Default FALSE value for [-chat]
  [T/F OPT]Default FALSE value for [-inform]
  [T/F OPT]Default FALSE value for [-quiet]
  run level: 0
  [T/F OPT]Default FALSE value for [-benchmark]
  [T/F OPT]Default FALSE value for [-debug]
  [INT OPT]Default value for [-sym_des_units] 1
  [T/F OPT]Default FALSE value for [-mj_min]
  [REAL OPT]Default value for [-mod_hhrep_height] 1
  [REAL OPT]Default value for [-mod_hhrep_width] 1
  [REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
  [REAL OPT]Default value for [-mod_hhrep_exponent] 4
  [REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
  [REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
  [STR OPT]New value for [-s] sample.pdb.
  Starting structure: sample
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
  [STR OPT]Default value for [-atom_vdw_set] default.
  [T/F OPT]Default FALSE value for [-IUPAC]
  Atom_mode set to all
  [STR OPT]Default value for [-paircutoffs] paircutoffs.
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
  [T/F OPT]Default FALSE value for [-interface_ds]
  [T/F OPT]New TRUE value for [-decoystats]
  set_decoystats_flag: from,to F T
  [T/F OPT]New TRUE value for [-ds_outpdb_only]
  [T/F OPT]Default FALSE value for [-tight_core_analysis]
  [T/F OPT]Default FALSE value for [-decoyfeatures]
  [T/F OPT]Default FALSE value for [-t32s3]
  [T/F OPT]Default FALSE value for [-evolution]
  [T/F OPT]Default FALSE value for [-evol_recomb]
  [T/F OPT]Default FALSE value for [-profile]
  [T/F OPT]Default FALSE value for [-constant_seed]
  [T/F OPT]Default FALSE value for [-dummy_model]
  [T/F OPT]Default FALSE value for [-saxs_model]
  Profile defined from q = 0 to 1.
  [T/F OPT]Default FALSE value for [-new_centroid_packing]
  [REAL OPT]Default value for [-centroid_pack_weight] 2
  [T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
  [REAL OPT]Default value for [-cb_weight] 1
  [REAL OPT]Default value for [-localstrandpair_penalty] 0
  [REAL OPT]Default value for [-rsd_wt_helix] 1
  [REAL OPT]Default value for [-rsd_wt_loop] 1
  [REAL OPT]Default value for [-rsd_wt_strand] 1
  [REAL OPT]Default value for [-strand_dist_cutoff] 6.5
  [T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
  [REAL OPT]Default value for [-seq_sep_scale] 20
  [REAL OPT]Default value for [-max_strand_dist_cutoff] 12
  [T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
  [T/F OPT]Default FALSE value for [-handedness_score]
  [T/F OPT]Default FALSE value for [-barcode_mode]
  disabling all filters
  [REAL OPT]Default value for [-co] -1
  [REAL OPT]Default value for [-rms] -1
  [T/F OPT]Default FALSE value for [-repeatin]
  [T/F OPT]Default FALSE value for [-repeatout]
  [T/F OPT]Default FALSE value for [-clnt]
  [T/F OPT]Default FALSE value for [-constant_seed]
  reading starting structure: ./sample.pdb
  [T/F OPT]Default FALSE value for [-use_native_centroid]
  initializing full atom functions
  [T/F OPT]Default FALSE value for [-dna_weights]
  [T/F OPT]Default FALSE value for [-soft_rep]
  [T/F OPT]Default FALSE value for [-soft_rep_design]
  [T/F OPT]Default FALSE value for [-use_aw]
  [T/F OPT]Default FALSE value for [-use_bw]
  [T/F OPT]Default FALSE value for [-use_packing_etables_always]
  [T/F OPT]Default FALSE value for [-smooth_etable]
  [T/F OPT]Default FALSE value for [-reduce_templates]
  [T/F OPT]Default FALSE value for [-gen_born]
  [T/F OPT]Default FALSE value for [-small_radii]
  [STR OPT]Default value for [-fa_lj_rep_slope] highres.
  Starting energy table calculation
  Energy table parameter set: polh_aroh Revision: 14003 Date: 2007-04-06 14:24:40 -0400 (Fri, 06 Apr 2007)
  [T/F OPT]Default FALSE value for [-mod_hhrep]
  Finished calculating energy tables.
  [T/F OPT]Default FALSE value for [-mod_etable]
  [T/F OPT]Default FALSE value for [-input_etables]
  [T/F OPT]Default FALSE value for [-output_etables]
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/bbdep02.May.sortlib
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/plane_data_table_1015.dat
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/pdbpairstats_fine
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa_n
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa_pp
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/avgE_from_pdb
  Filling missing atoms
  optimizing missing atoms
  [T/F OPT]Default FALSE value for [-disallow_hbond_o4star]
  [T/F OPT]Default FALSE value for [-disallow_hbond_ho2star]
  Instantiating PDInteractionGraph
  optimizing hydrogen positions
  [T/F OPT]Default FALSE value for [-dun_sd_correction]
  Instantiating PDInteractionGraph
  [T/F OPT]Default FALSE value for [-simple_elec]
  [T/F OPT]Default FALSE value for [-record_annealer_trajectory]
  [T/F OPT]Default FALSE value for [-disallow_quench]
  WARNING:: end of pdb file reached: angle, secstruct, & res info not found
  Looking for dssp file: ./sample.dssp
  dssp file not found
  Looking for secondary structure assignment file: ./sample.ssa
  ssa file not found
  calculating secondary structure from torsion angles
  calculating secondary structure from internal DSSP calculation.
  [T/F OPT]Default FALSE value for [-use_input_bond]
  [T/F OPT]Default FALSE value for [-regions]
  Docking partners detected: Residues
  1- 222
  223- 358
  
  Docking partners: Residues
  1-222
  223-358
  
  Centroids:
  ( 29.562, 23.955, 18.127)
  ( 12.007, 19.613, 43.600)
  
  Centroid bond:
  ( 17.555, 4.342, -25.473)
  
  Docking basis vectors:
  ( 0.562, 0.139, -0.815)
  ( 0.827, -0.094, 0.554)
  ( 0.000, -0.986, -0.168)
  Contact point:
  ( 20.784, 21.784, 30.864)
  
  File: ./—-.cst not found
  Running without site constraints
  File: ./—-.dst not found
  Running without dist constraints
  [T/F OPT]Default FALSE value for [-apply_filters]
  [T/F OPT]Default FALSE value for [-knot_filter]
  [T/F OPT]Default FALSE value for [-poke_filter]
  [T/F OPT]Default FALSE value for [-score_contact_fullatom]
  [T/F OPT]Default FALSE value for [-long_range_hb_weight]
  [T/F OPT]Default FALSE value for [-short_range_hb_weight]
  [T/F OPT]Default FALSE value for [-rand_envpair_res_wt]
  [REAL OPT]Default value for [-parallel_weight] 1
  [REAL OPT]Default value for [-antiparallel_weight] 1
  [T/F OPT]Default FALSE value for [-rand_SS_wt]
  [T/F OPT]Default FALSE value for [-random_parallel_antiparallel]
  [T/F OPT]Default FALSE value for [-rand_cst_res_wt]
  [T/F OPT]Default FALSE value for [-use_barcode_to_score]
  [T/F OPT]Default FALSE value for [-ss_vdw]
  [T/F OPT]Default FALSE value for [-use_alpha_rama]
  [T/F OPT]Default FALSE value for [-saxs_model_score]
  [T/F OPT]Default FALSE value for [-ssweight_for_homolog]
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/SASA-masks.dat
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/SASA-angles.dat
  ========================================
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/sasa_offsets.txt
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/sasa_prob_cdf.txt
  [T/F OPT]Default FALSE value for [-t32s3]
  PACKNG: deleting curent protein_sasa oject
  [T/F OPT]Default FALSE value for [-packing_heavy_atoms_only]
  [T/F OPT]Default FALSE value for [-output_input_pdb]
  [T/F OPT]Default FALSE value for [-movie]
  [T/F OPT]Default FALSE value for [-trajectory]
  initializing full atom coordinates
  Protein Complex defined as Residues 1- 222 and 223- 358
  [T/F OPT]Default FALSE value for [-set_interface_cutoff]
  STARTING DECOYSTATS PARTNER COMPLEX AB:
  STARTING DECOYSTATS PARTNER B:
  STARTING DECOYSTATS PARTNER A:
  interface mode, reading mutlist: sample_mutlist_all
  interface mode, found number of mutated structures: 680
  examining mutant # 1
  [T/F OPT]Default FALSE value for [-pack_bump_cutoff]
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 2
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 3
  designing with this many rotamers 15
  Instantiating PDInteractionGraph
  examining mutant # 4
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 5
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 6
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 7
  designing with this many rotamers 22
  Instantiating PDInteractionGraph
  examining mutant # 8
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 9
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 10
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 11
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 12
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 13
  designing with this many rotamers 26
  Instantiating PDInteractionGraph
  examining mutant # 14
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 15
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 16
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 17
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 18
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 19
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 20
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 21
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 22
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 23
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 24
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 25
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 26
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 27
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 28
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 29
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 30
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 31
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 32
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 33
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 34
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 35
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 36
  designing with this many rotamers 20
  Instantiating PDInteractionGraph
  examining mutant # 37
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 38
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 39
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 40
  designing with this many rotamers 25
  Instantiating PDInteractionGraph
  examining mutant # 41
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 42
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 43
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 44
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 45
  designing with this many rotamers 19
  Instantiating PDInteractionGraph
  examining mutant # 46
  designing with this many rotamers 21
  Instantiating PDInteractionGraph
  examining mutant # 47
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 48
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 49
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 50
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 51
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 52
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 53
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 54
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 55
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 56
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 57
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 58
  designing with this many rotamers 20
  Instantiating PDInteractionGraph
  examining mutant # 59
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 60
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 61
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 62
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 63
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 64
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 65
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 66
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 67
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 68
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 69
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 70
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 71
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 72
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 73
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 74
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 75
  designing with this many rotamers 16
  Instantiating PDInteractionGraph
  examining mutant # 76
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 77
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 78
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 79
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 80
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 81
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 82
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 83
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 84
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 85
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 86
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 87
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 88
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 89
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 90
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 91
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 92
  designing with this many rotamers 16
  Instantiating PDInteractionGraph
  examining mutant # 93
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 94
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 95
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 96
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 97
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 98
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 99
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 100
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 101
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 102
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 103
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 104
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 105
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 106
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 107
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 108
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 109
  designing with this many rotamers 21
  Instantiating PDInteractionGraph
  examining mutant # 110
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 111
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 112
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 113
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 114
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 115
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 116
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 117
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 118
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 119
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 120
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 121
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 122
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 123
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 124
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 125
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 126
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 127
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 128
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 129
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 130
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 131
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 132
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 133
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 134
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 135
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 136
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 137
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 138
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 139
  designing with this many rotamers 19
  Instantiating PDInteractionGraph
  examining mutant # 140
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 141
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 142
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 143
  designing with this many rotamers 20
  Instantiating PDInteractionGraph
  examining mutant # 144
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 145
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 146
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 147
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 148
  designing with this many rotamers 19
  Instantiating PDInteractionGraph
  examining mutant # 149
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 150
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 151
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 152
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 153
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 154
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 155
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 156
  designing with this many rotamers 22
  Instantiating PDInteractionGraph
  examining mutant # 157
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 158
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 159
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 160
  designing with this many rotamers 25
  Instantiating PDInteractionGraph
  examining mutant # 161
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 162
  designing with this many rotamers 14
  Instantiating PDInteractionGraph
  examining mutant # 163
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 164
  designing with this many rotamers 21
  Instantiating PDInteractionGraph
  examining mutant # 165
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 166
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 167
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 168
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 169
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 170
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 171
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 172
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 173
  designing with this many rotamers 14
  Instantiating PDInteractionGraph
  examining mutant # 174
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 175
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 176
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 177
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 178
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 179
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 180
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 181
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 182
  designing with this many rotamers 16
  Instantiating PDInteractionGraph
  examining mutant # 183
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 184
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 185
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 186
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 187
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 188
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 189
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 190
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 191
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 192
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 193
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 194
  designing with this many rotamers 15
  Instantiating PDInteractionGraph
  examining mutant # 195
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 196
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 197
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 198
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 199
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 200
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 201
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 202
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 203
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 204
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 205
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 206
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 207
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 208
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 209
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 210
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 211
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 212
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 213
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 214
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 215
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 216
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 217
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 218
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 219
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 220
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 221
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 222
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 223
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 224
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 225
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 226
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 227
  designing with this many rotamers 19
  Instantiating PDInteractionGraph
  examining mutant # 228
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 229
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 230
  designing with this many rotamers 15
  Instantiating PDInteractionGraph
  examining mutant # 231
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 232
  designing with this many rotamers 17
  Instantiating PDInteractionGraph
  examining mutant # 233
  designing with this many rotamers 14
  Instantiating PDInteractionGraph
  examining mutant # 234
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 235
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 236
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 237
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 238
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 239
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 240
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 241
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 242
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 243
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 244
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 245
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 246
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 247
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 248
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 249
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 250
  designing with this many rotamers 19
  Instantiating PDInteractionGraph
  examining mutant # 251
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 252
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 253
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 254
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 255
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 256
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 257
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 258
  designing with this many rotamers 19
  Instantiating PDInteractionGraph
  examining mutant # 259
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 260
  designing with this many rotamers 7
  Instantiating PDInteractionGraph
  examining mutant # 261
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 262
  designing with this many rotamers 33
  Instantiating PDInteractionGraph
  examining mutant # 263
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 264
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 265
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 266
  designing with this many rotamers 21
  Instantiating PDInteractionGraph
  examining mutant # 267
  designing with this many rotamers 32
  Instantiating PDInteractionGraph
  examining mutant # 268
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 269
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 270
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 271
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 272
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 273
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 274
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 275
  designing with this many rotamers 14
  Instantiating PDInteractionGraph
  examining mutant # 276
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 277
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 278
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 279
  designing with this many rotamers 23
  Instantiating PDInteractionGraph
  examining mutant # 280
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 281
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 282
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 283
  designing with this many rotamers 16
  Instantiating PDInteractionGraph
  examining mutant # 284
  designing with this many rotamers 17
  Instantiating PDInteractionGraph
  examining mutant # 285
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 286
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 287
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 288
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 289
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 290
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 291
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 292
  designing with this many rotamers 17
  Instantiating PDInteractionGraph
  examining mutant # 293
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 294
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 295
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 296
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 297
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 298
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 299
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 300
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 301
  designing with this many rotamers 14
  Instantiating PDInteractionGraph
  examining mutant # 302
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 303
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 304
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 305
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 306
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 307
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 308
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 309
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 310
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 311
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 312
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 313
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 314
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 315
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 316
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 317
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 318
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 319
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 320
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 321
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 322
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 323
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 324
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 325
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 326
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 327
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 328
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 329
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 330
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 331
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 332
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 333
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 334
  designing with this many rotamers 12
  Instantiating PDInteractionGraph
  examining mutant # 335
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 336
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 337
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 338
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 339
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 340
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 341
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 342
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 343
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 344
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 345
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 346
  designing with this many rotamers 27
  Instantiating PDInteractionGraph
  examining mutant # 347
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 348
  designing with this many rotamers 14
  Instantiating PDInteractionGraph
  examining mutant # 349
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 350
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 351
  designing with this many rotamers 15
  Instantiating PDInteractionGraph
  examining mutant # 352
  designing with this many rotamers 27
  Instantiating PDInteractionGraph
  examining mutant # 353
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 354
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 355
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 356
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 357
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 358
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 359
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 360
  designing with this many rotamers 14
  Instantiating PDInteractionGraph
  examining mutant # 361
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 362
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 363
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 364
  designing with this many rotamers 16
  Instantiating PDInteractionGraph
  examining mutant # 365
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 366
  designing with this many rotamers 10
  Instantiating PDInteractionGraph
  examining mutant # 367
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 368
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 369
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 370
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 371
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 372
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 373
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 374
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 375
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 376
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 377
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 378
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 379
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 380
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 381
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 382
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 383
  designing with this many rotamers 13
  Instantiating PDInteractionGraph
  examining mutant # 384
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 385
  designing with this many rotamers 20
  Instantiating PDInteractionGraph
  examining mutant # 386
  designing with this many rotamers 18
  Instantiating PDInteractionGraph
  examining mutant # 387
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 388
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 389
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 390
  designing with this many rotamers 3
  Instantiating PDInteractionGraph
  examining mutant # 391
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 392
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  examining mutant # 393
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 394
  designing with this many rotamers 4
  Instantiating PDInteractionGraph
  examining mutant # 395
  designing with this many rotamers 6
  Instantiating PDInteractionGraph
  examining mutant # 396
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 397
  designing with this many rotamers 25
  Instantiating PDInteractionGraph
  examining mutant # 398
  designing with this many rotamers 5
  Instantiating PDInteractionGraph
  examining mutant # 399
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 400
  designing with this many rotamers 11
  Instantiating PDInteractionGraph
  examining mutant # 401
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 402
  designing with this many rotamers 19
  Instantiating PDInteractionGraph
  examining mutant # 403
  designing with this many rotamers 15
  Instantiating PDInteractionGraph
  examining mutant # 404
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 405
  designing with this many rotamers 9
  Instantiating PDInteractionGraph
  examining mutant # 406
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 407
  designing with this many rotamers 2
  Instantiating PDInteractionGraph
  examining mutant # 408
  designing with this many rotamers 8
  Instantiating PDInteractionGraph
  examining mutant # 409
  designing with this many rotamers 1
  Instantiating PDInteractionGraph
  p0_6135: p4_error: interrupt SIGx: 15
  p0_6135: (992.487903) net_send: could not write to fd=4, errno = 32 ############ I typed Ctrl + C here ###
  
  ####################### The client 1 node ####################
  ####################### This log file was gererated by calling the command ( ############################
  client number is: 1
  command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
  [T/F OPT]Default FALSE value for [-no_option_display]
  [T/F OPT]Default FALSE value for [-args_file]
  [STR OPT]Default value for [-paths] paths.txt.
  [T/F OPT]Default FALSE value for [-version]
  [T/F OPT]Default FALSE value for [-score]
  [T/F OPT]Default FALSE value for [-abinitio]
  [T/F OPT]Default FALSE value for [-refine]
  [T/F OPT]Default FALSE value for [-assemble]
  [T/F OPT]Default FALSE value for [-idealize]
  [T/F OPT]Default FALSE value for [-relax]
  [T/F OPT]Default FALSE value for [-abrelax]
  [T/F OPT]Default FALSE value for [-abrelax_mode]
  [T/F OPT]Default FALSE value for [-design]
  [T/F OPT]Default FALSE value for [-dock]
  [T/F OPT]Default FALSE value for [-membrane]
  [T/F OPT]Default FALSE value for [-loops]
  [T/F OPT]Default FALSE value for [-pdbstats]
  [T/F OPT]New TRUE value for [-interface]
  [T/F OPT]Default FALSE value for [-fake_native]
  [T/F OPT]Default FALSE value for [-docking_hb_stats]
  [T/F OPT]Default FALSE value for [-output_position_hetatm]
  [T/F OPT]Default FALSE value for [-ddg_bind_only]
  [STR OPT]New value for [-mutlist] sample_mutlist_all.
  [STR OPT]Default value for [-intout] INT.OUT.
  [T/F OPT]Default FALSE value for [-Wpack_only]
  [T/F OPT]Default FALSE value for [-Wint_only]
  [T/F OPT]Default FALSE value for [-pmut_scan]
  [T/F OPT]Default FALSE value for [-affin_incr]
  [T/F OPT]Default FALSE value for [-ala_scan_only]
  [T/F OPT]Default FALSE value for [-monomeric_protein]
  [T/F OPT]Default FALSE value for [-safe]
  [T/F OPT]Default FALSE value for [-output_structure]
  [T/F OPT]Default FALSE value for [-repack_neighbors]
  [T/F OPT]Default FALSE value for [-min_interface]
  [T/F OPT]Default FALSE value for [-relax_unbound]
  [T/F OPT]Default FALSE value for [-alter_spec_format]
  [T/F OPT]Default FALSE value for [-chain_energies]
  Rosetta mode: interface
  [T/F OPT]Default FALSE value for [-chain]
  [T/F OPT]Default FALSE value for [-protein]
  [T/F OPT]Default FALSE value for [-series]
  [INT OPT]Default value for [-nstruct] 1
  [T/F OPT]Default FALSE value for [-concatenate_pdbs]
  [T/F OPT]Default FALSE value for [-single_silent_writer]
  [T/F OPT]Default FALSE value for [-read_all_chains]
  [T/F OPT]Default FALSE value for [-preserve_header]
  [T/F OPT]Default FALSE value for [-use_pdb_numbering]
  [T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
  [T/F OPT]Default FALSE value for [-repack]
  [T/F OPT]Default FALSE value for [-no_optH]
  [T/F OPT]Default FALSE value for [-overwrite]
  [T/F OPT]Default FALSE value for [-output_pdb_gz]
  [T/F OPT]Default FALSE value for [-output_silent_gz]
  [T/F OPT]Default FALSE value for [-output_scorefile_gz]
  [T/F OPT]Default FALSE value for [-pose_silent_out]
  [T/F OPT]Default FALSE value for [-sasapack_bvalues]
  [T/F OPT]Default FALSE value for [-cenlist_values]
  [T/F OPT]Default FALSE value for [-termini]
  [T/F OPT]Default FALSE value for [-Nterminus]
  [T/F OPT]Default FALSE value for [-Cterminus]
  [T/F OPT]Default FALSE value for [-use_trie]
  [T/F OPT]Default FALSE value for [-no_trie]
  [T/F OPT]Default FALSE value for [-use_conformer]
  [T/F OPT]Default FALSE value for [-use_bbind_conformer]
  [T/F OPT]Default FALSE value for [-trials_trie]
  [T/F OPT]Default FALSE value for [-no_trials_trie]
  [T/F OPT]Default FALSE value for [-pose_relax]
  [T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
  [T/F OPT]Default FALSE value for [-read_interaction_graph]
  [T/F OPT]Default FALSE value for [-write_interaction_graph]
  [STR OPT]Default value for [-ig_file] .
  [T/F OPT]Default FALSE value for [-packer_precompute_only]
  [T/F OPT]Default FALSE value for [-tight_memory_restrictions]
  [T/F OPT]Default FALSE value for [-lazy_ig]
  [T/F OPT]Default FALSE value for [-linmem_ig]
  [T/F OPT]Default FALSE value for [-minimalist_ig]
  [T/F OPT]Default FALSE value for [-use_sasa_pack_score]
  [T/F OPT]Default FALSE value for [-output_dot_kinemage]
  [T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
  [T/F OPT]Default FALSE value for [-multi_cool_annealer]
  [T/F OPT]Default FALSE value for [-debug_annealer_design]
  [T/F OPT]Default FALSE value for [-no_his_his_pairE]
  [T/F OPT]Default FALSE value for [-silent_input]
  [T/F OPT]Default FALSE value for [-skip_scorefile_check]
  [T/F OPT]Default FALSE value for [-timer]
  [T/F OPT]Default FALSE value for [-count_attempts]
  [T/F OPT]Default FALSE value for [-status]
  [T/F OPT]Default FALSE value for [-decoy_status]
  [T/F OPT]Default FALSE value for [-ise_movie]
  [T/F OPT]Default FALSE value for [-output_all]
  [T/F OPT]Default FALSE value for [-output_chi_silent]
  [T/F OPT]Default FALSE value for [-accept_all]
  [T/F OPT]Default FALSE value for [-skip_missing_residues]
  [T/F OPT]Default FALSE value for [-use_input_sc]
  [T/F OPT]Default FALSE value for [-use_input_cb]
  [STR OPT]Default value for [-weightfile] none.
  [STR OPT]Default value for [-cst] cst.
  [STR OPT]Default value for [-dpl] dpl.
  [STR OPT]Default value for [-resfile] none.
  [STR OPT]Default value for [-equiv_resfile] none.
  [T/F OPT]Default FALSE value for [-auto_resfile]
  [T/F OPT]Default FALSE value for [-chain_inc]
  WARNING::
  constraints will not be used: query not defined
  by series_code,protein_name,and chain_id
  WARNING:: nstruct > 0 but output_coord F
  no pdb files will be output
  [T/F OPT]Default FALSE value for [-full_filename]
  [T/F OPT]Default FALSE value for [-map_sequence]
  [INT OPT]Default value for [-max_frags] 200
  [T/F OPT]Default FALSE value for [-output_centroids]
  [STR OPT]Default value for [-protein_name_prefix] .
  [STR OPT]Default value for [-frags_name_prefix] .
  [T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
  [T/F OPT]Default FALSE value for [-use_homolog_env_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-output_hbond_info]
  [T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
  [T/F OPT]Default FALSE value for [-monomer_input]
  [REAL OPT]Default value for [-vdw_reweight] 1
  [REAL OPT]Default value for [-env_reweight] 1
  [REAL OPT]Default value for [-pair_reweight] 1
  [REAL OPT]Default value for [-cb_reweight] 1
  [REAL OPT]Default value for [-sheet_reweight] 1
  [REAL OPT]Default value for [-ss_reweight] 1
  [REAL OPT]Default value for [-hs_reweight] 1
  [REAL OPT]Default value for [-rsigma_reweight] 1
  [REAL OPT]Default value for [-rg_reweight] 1
  [REAL OPT]Default value for [-pc_reweight] 1
  [REAL OPT]Default value for [-fa_atr_reweight] 1
  [REAL OPT]Default value for [-fa_rep_reweight] 1
  [REAL OPT]Default value for [-fa_dun_reweight ] 1
  [REAL OPT]Default value for [-fa_pair_reweight] 1
  [REAL OPT]Default value for [-fa_plane_reweight] 1
  [REAL OPT]Default value for [-fa_solv_reweight] 1
  [REAL OPT]Default value for [-fa_ref_reweight ] 1
  [REAL OPT]Default value for [-fa_pH_reweight] 1
  [REAL OPT]Default value for [-fa_h2o_reweight] 1
  [REAL OPT]Default value for [-fa_prob1b_reweight] 1
  [REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
  [REAL OPT]Default value for [-hb_srbb_reweight] 1
  [REAL OPT]Default value for [-hb_lrbb_reweight] 1
  [REAL OPT]Default value for [-hb_sc_reweight] 1
  [REAL OPT]Default value for [-chainbreak_reweight] 1
  [REAL OPT]Default value for [-electron_density_reweight] 1
  [REAL OPT]Default value for [-dummy_model_reweight] 1
  [REAL OPT]Default value for [-saxs_model_reweight] 1
  [REAL OPT]Default value for [-Wplane_total] 0
  [REAL OPT]Default value for [-barcode_reweight] 1
  [REAL OPT]Default value for [-barcode_energy_reweight] 1
  [T/F OPT]Default FALSE value for [-fa_max_dis]
  [T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
  [T/F OPT]Default FALSE value for [-no_hb_env_dep]
  [T/F OPT]Default FALSE value for [-find_disulf]
  [T/F OPT]Default FALSE value for [-fix_disulf]
  [T/F OPT]Default FALSE value for [-prna]
  [T/F OPT]Default FALSE value for [-enable_dna]
  [T/F OPT]Default FALSE value for [-enable_rna]
  [T/F OPT]Default FALSE value for [-dna_interface]
  [T/F OPT]Default FALSE value for [-enable_ligand_aa]
  [T/F OPT]Default FALSE value for [-phospho_ser]
  [T/F OPT]Default FALSE value for [-surface]
  [T/F OPT]Default FALSE value for [-loops]
  [T/F OPT]Default FALSE value for [-taboo]
  [T/F OPT]Default FALSE value for [-vary_omega]
  [T/F OPT]Default FALSE value for [-fine_hb_categories]
  [T/F OPT]Default FALSE value for [-geometric_sol]
  [T/F OPT]Default FALSE value for [-ex1]
  [T/F OPT]Default FALSE value for [-ex2]
  [T/F OPT]Default FALSE value for [-ex3]
  [T/F OPT]Default FALSE value for [-ex4]
  [T/F OPT]Default FALSE value for [-ex1aro]
  [T/F OPT]Default FALSE value for [-ex1aro_half]
  [T/F OPT]Default FALSE value for [-ex2aro_only]
  [T/F OPT]Default FALSE value for [-ex1aro_exposed]
  [T/F OPT]Default FALSE value for [-ex2aro_exposed]
  [T/F OPT]Default FALSE value for [-exOH]
  [INT OPT]Default value for [-extrachi_cutoff] 18
  [T/F OPT]Default FALSE value for [-rot_pert]
  [T/F OPT]Default FALSE value for [-rot_pert_input]
  [T/F OPT]Default FALSE value for [-exdb]
  [T/F OPT]Default FALSE value for [-rotamer_explosion]
  [T/F OPT]Default FALSE value for [-min_best_rots]
  [T/F OPT]Default FALSE value for [-rot_opt]
  [T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
  [T/F OPT]Default FALSE value for [-explicit_h2o]
  [T/F OPT]Default FALSE value for [-solvate]
  [T/F OPT]Default FALSE value for [-pH]
  [T/F OPT]Default FALSE value for [-try_both_his_tautomers]
  [T/F OPT]Default FALSE value for [-hydrate_dna]
  [T/F OPT]Default FALSE value for [-ex_dna_waters]
  [T/F OPT]Default FALSE value for [-minimize_rot]
  [T/F OPT]Default FALSE value for [-read_hetero_h2o]
  [T/F OPT]Default FALSE value for [-Wint_score_only]
  [T/F OPT]Default FALSE value for [-Wint_repack_only]
  [T/F OPT]Default FALSE value for [-ligand]
  [T/F OPT]Default FALSE value for [-enzyme_design]
  [T/F OPT]Default FALSE value for [-score_contact_flag]
  [T/F OPT]Default FALSE value for [-score_contact_weight]
  [T/F OPT]Default FALSE value for [-score_contact_threshold]
  [T/F OPT]Default FALSE value for [-scorefxn]
  default centroid scorefxn: 4
  default fullatom scorefxn: 12
  [INT OPT]Default value for [-run_level] 0
  [T/F OPT]Default FALSE value for [-silent]
  [T/F OPT]Default FALSE value for [-output_silent_gz]
  [T/F OPT]Default FALSE value for [-verbose]
  [T/F OPT]Default FALSE value for [-gush]
  [T/F OPT]Default FALSE value for [-yap]
  [T/F OPT]Default FALSE value for [-chat]
  [T/F OPT]Default FALSE value for [-inform]
  [T/F OPT]Default FALSE value for [-quiet]
  run level: 0
  [T/F OPT]Default FALSE value for [-benchmark]
  [T/F OPT]Default FALSE value for [-debug]
  [INT OPT]Default value for [-sym_des_units] 1
  [T/F OPT]Default FALSE value for [-mj_min]
  [REAL OPT]Default value for [-mod_hhrep_height] 1
  [REAL OPT]Default value for [-mod_hhrep_width] 1
  [REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
  [REAL OPT]Default value for [-mod_hhrep_exponent] 4
  [REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
  [REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
  [STR OPT]New value for [-s] sample.pdb.
  Starting structure: sample
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
  [STR OPT]Default value for [-atom_vdw_set] default.
  [T/F OPT]Default FALSE value for [-IUPAC]
  Atom_mode set to all
  [STR OPT]Default value for [-paircutoffs] paircutoffs.
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
  [T/F OPT]Default FALSE value for [-interface_ds]
  [T/F OPT]New TRUE value for [-decoystats]
  set_decoystats_flag: from,to F T
  [T/F OPT]New TRUE value for [-ds_outpdb_only]
  [T/F OPT]Default FALSE value for [-tight_core_analysis]
  [T/F OPT]Default FALSE value for [-decoyfeatures]
  [T/F OPT]Default FALSE value for [-t32s3]
  [T/F OPT]Default FALSE value for [-evolution]
  [T/F OPT]Default FALSE value for [-evol_recomb]
  [T/F OPT]Default FALSE value for [-profile]
  [T/F OPT]Default FALSE value for [-dummy_model]
  [T/F OPT]Default FALSE value for [-saxs_model]
  Profile defined from q = 0 to 1.
  [T/F OPT]Default FALSE value for [-new_centroid_packing]
  [REAL OPT]Default value for [-centroid_pack_weight] 2
  [T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
  [REAL OPT]Default value for [-cb_weight] 1
  [REAL OPT]Default value for [-localstrandpair_penalty] 0
  [REAL OPT]Default value for [-rsd_wt_helix] 1
  [REAL OPT]Default value for [-rsd_wt_loop] 1
  [REAL OPT]Default value for [-rsd_wt_strand] 1
  [REAL OPT]Default value for [-strand_dist_cutoff] 6.5
  [T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
  [REAL OPT]Default value for [-seq_sep_scale] 20
  [REAL OPT]Default value for [-max_strand_dist_cutoff] 12
  [T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
  [T/F OPT]Default FALSE value for [-handedness_score]
  [T/F OPT]Default FALSE value for [-barcode_mode]
  disabling all filters
  [REAL OPT]Default value for [-co] -1
  [REAL OPT]Default value for [-rms] -1
  [T/F OPT]Default FALSE value for [-repeatin]
  [T/F OPT]Default FALSE value for [-repeatout]
  [T/F OPT]Default FALSE value for [-clnt]
  requesting task from server
  
  ####################### The client 2 node ####################
  ####################### This log file was gererated by calling the command ( ############################
  client number is: 2
  command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
  [T/F OPT]Default FALSE value for [-no_option_display]
  [T/F OPT]Default FALSE value for [-args_file]
  [STR OPT]Default value for [-paths] paths.txt.
  [T/F OPT]Default FALSE value for [-version]
  [T/F OPT]Default FALSE value for [-score]
  [T/F OPT]Default FALSE value for [-abinitio]
  [T/F OPT]Default FALSE value for [-refine]
  [T/F OPT]Default FALSE value for [-assemble]
  [T/F OPT]Default FALSE value for [-idealize]
  [T/F OPT]Default FALSE value for [-relax]
  [T/F OPT]Default FALSE value for [-abrelax]
  [T/F OPT]Default FALSE value for [-abrelax_mode]
  [T/F OPT]Default FALSE value for [-design]
  [T/F OPT]Default FALSE value for [-dock]
  [T/F OPT]Default FALSE value for [-membrane]
  [T/F OPT]Default FALSE value for [-loops]
  [T/F OPT]Default FALSE value for [-pdbstats]
  [T/F OPT]New TRUE value for [-interface]
  [T/F OPT]Default FALSE value for [-fake_native]
  [T/F OPT]Default FALSE value for [-docking_hb_stats]
  [T/F OPT]Default FALSE value for [-output_position_hetatm]
  [T/F OPT]Default FALSE value for [-ddg_bind_only]
  [STR OPT]New value for [-mutlist] sample_mutlist_all.
  [STR OPT]Default value for [-intout] INT.OUT.
  [T/F OPT]Default FALSE value for [-Wpack_only]
  [T/F OPT]Default FALSE value for [-Wint_only]
  [T/F OPT]Default FALSE value for [-pmut_scan]
  [T/F OPT]Default FALSE value for [-affin_incr]
  [T/F OPT]Default FALSE value for [-ala_scan_only]
  [T/F OPT]Default FALSE value for [-monomeric_protein]
  [T/F OPT]Default FALSE value for [-safe]
  [T/F OPT]Default FALSE value for [-output_structure]
  [T/F OPT]Default FALSE value for [-repack_neighbors]
  [T/F OPT]Default FALSE value for [-min_interface]
  [T/F OPT]Default FALSE value for [-relax_unbound]
  [T/F OPT]Default FALSE value for [-alter_spec_format]
  [T/F OPT]Default FALSE value for [-chain_energies]
  Rosetta mode: interface
  [T/F OPT]Default FALSE value for [-chain]
  [T/F OPT]Default FALSE value for [-protein]
  [T/F OPT]Default FALSE value for [-series]
  [INT OPT]Default value for [-nstruct] 1
  [T/F OPT]Default FALSE value for [-concatenate_pdbs]
  [T/F OPT]Default FALSE value for [-single_silent_writer]
  [T/F OPT]Default FALSE value for [-read_all_chains]
  [T/F OPT]Default FALSE value for [-preserve_header]
  [T/F OPT]Default FALSE value for [-use_pdb_numbering]
  [T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
  [T/F OPT]Default FALSE value for [-repack]
  [T/F OPT]Default FALSE value for [-no_optH]
  [T/F OPT]Default FALSE value for [-overwrite]
  [T/F OPT]Default FALSE value for [-output_pdb_gz]
  [T/F OPT]Default FALSE value for [-output_silent_gz]
  [T/F OPT]Default FALSE value for [-output_scorefile_gz]
  [T/F OPT]Default FALSE value for [-pose_silent_out]
  [T/F OPT]Default FALSE value for [-sasapack_bvalues]
  [T/F OPT]Default FALSE value for [-cenlist_values]
  [T/F OPT]Default FALSE value for [-termini]
  [T/F OPT]Default FALSE value for [-Nterminus]
  [T/F OPT]Default FALSE value for [-Cterminus]
  [T/F OPT]Default FALSE value for [-use_trie]
  [T/F OPT]Default FALSE value for [-no_trie]
  [T/F OPT]Default FALSE value for [-use_conformer]
  [T/F OPT]Default FALSE value for [-use_bbind_conformer]
  [T/F OPT]Default FALSE value for [-trials_trie]
  [T/F OPT]Default FALSE value for [-no_trials_trie]
  [T/F OPT]Default FALSE value for [-pose_relax]
  [T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
  [T/F OPT]Default FALSE value for [-read_interaction_graph]
  [T/F OPT]Default FALSE value for [-write_interaction_graph]
  [STR OPT]Default value for [-ig_file] .
  [T/F OPT]Default FALSE value for [-packer_precompute_only]
  [T/F OPT]Default FALSE value for [-tight_memory_restrictions]
  [T/F OPT]Default FALSE value for [-lazy_ig]
  [T/F OPT]Default FALSE value for [-linmem_ig]
  [T/F OPT]Default FALSE value for [-minimalist_ig]
  [T/F OPT]Default FALSE value for [-use_sasa_pack_score]
  [T/F OPT]Default FALSE value for [-output_dot_kinemage]
  [T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
  [T/F OPT]Default FALSE value for [-multi_cool_annealer]
  [T/F OPT]Default FALSE value for [-debug_annealer_design]
  [T/F OPT]Default FALSE value for [-no_his_his_pairE]
  [T/F OPT]Default FALSE value for [-silent_input]
  [T/F OPT]Default FALSE value for [-skip_scorefile_check]
  [T/F OPT]Default FALSE value for [-timer]
  [T/F OPT]Default FALSE value for [-count_attempts]
  [T/F OPT]Default FALSE value for [-status]
  [T/F OPT]Default FALSE value for [-decoy_status]
  [T/F OPT]Default FALSE value for [-ise_movie]
  [T/F OPT]Default FALSE value for [-output_all]
  [T/F OPT]Default FALSE value for [-output_chi_silent]
  [T/F OPT]Default FALSE value for [-accept_all]
  [T/F OPT]Default FALSE value for [-skip_missing_residues]
  [T/F OPT]Default FALSE value for [-use_input_sc]
  [T/F OPT]Default FALSE value for [-use_input_cb]
  [STR OPT]Default value for [-weightfile] none.
  [STR OPT]Default value for [-cst] cst.
  [STR OPT]Default value for [-dpl] dpl.
  [STR OPT]Default value for [-resfile] none.
  [STR OPT]Default value for [-equiv_resfile] none.
  [T/F OPT]Default FALSE value for [-auto_resfile]
  [T/F OPT]Default FALSE value for [-chain_inc]
  WARNING::
  constraints will not be used: query not defined
  by series_code,protein_name,and chain_id
  WARNING:: nstruct > 0 but output_coord F
  no pdb files will be output
  [T/F OPT]Default FALSE value for [-full_filename]
  [T/F OPT]Default FALSE value for [-map_sequence]
  [INT OPT]Default value for [-max_frags] 200
  [T/F OPT]Default FALSE value for [-output_centroids]
  [STR OPT]Default value for [-protein_name_prefix] .
  [STR OPT]Default value for [-frags_name_prefix] .
  [T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
  [T/F OPT]Default FALSE value for [-use_homolog_env_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
  [T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
  [T/F OPT]Default FALSE value for [-output_hbond_info]
  [T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
  [T/F OPT]Default FALSE value for [-monomer_input]
  [REAL OPT]Default value for [-vdw_reweight] 1
  [REAL OPT]Default value for [-env_reweight] 1
  [REAL OPT]Default value for [-pair_reweight] 1
  [REAL OPT]Default value for [-cb_reweight] 1
  [REAL OPT]Default value for [-sheet_reweight] 1
  [REAL OPT]Default value for [-ss_reweight] 1
  [REAL OPT]Default value for [-hs_reweight] 1
  [REAL OPT]Default value for [-rsigma_reweight] 1
  [REAL OPT]Default value for [-rg_reweight] 1
  [REAL OPT]Default value for [-pc_reweight] 1
  [REAL OPT]Default value for [-fa_atr_reweight] 1
  [REAL OPT]Default value for [-fa_rep_reweight] 1
  [REAL OPT]Default value for [-fa_dun_reweight ] 1
  [REAL OPT]Default value for [-fa_pair_reweight] 1
  [REAL OPT]Default value for [-fa_plane_reweight] 1
  [REAL OPT]Default value for [-fa_solv_reweight] 1
  [REAL OPT]Default value for [-fa_ref_reweight ] 1
  [REAL OPT]Default value for [-fa_pH_reweight] 1
  [REAL OPT]Default value for [-fa_h2o_reweight] 1
  [REAL OPT]Default value for [-fa_prob1b_reweight] 1
  [REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
  [REAL OPT]Default value for [-hb_srbb_reweight] 1
  [REAL OPT]Default value for [-hb_lrbb_reweight] 1
  [REAL OPT]Default value for [-hb_sc_reweight] 1
  [REAL OPT]Default value for [-chainbreak_reweight] 1
  [REAL OPT]Default value for [-electron_density_reweight] 1
  [REAL OPT]Default value for [-dummy_model_reweight] 1
  [REAL OPT]Default value for [-saxs_model_reweight] 1
  [REAL OPT]Default value for [-Wplane_total] 0
  [REAL OPT]Default value for [-barcode_reweight] 1
  [REAL OPT]Default value for [-barcode_energy_reweight] 1
  [T/F OPT]Default FALSE value for [-fa_max_dis]
  [T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
  [T/F OPT]Default FALSE value for [-no_hb_env_dep]
  [T/F OPT]Default FALSE value for [-find_disulf]
  [T/F OPT]Default FALSE value for [-fix_disulf]
  [T/F OPT]Default FALSE value for [-prna]
  [T/F OPT]Default FALSE value for [-enable_dna]
  [T/F OPT]Default FALSE value for [-enable_rna]
  [T/F OPT]Default FALSE value for [-dna_interface]
  [T/F OPT]Default FALSE value for [-enable_ligand_aa]
  [T/F OPT]Default FALSE value for [-phospho_ser]
  [T/F OPT]Default FALSE value for [-surface]
  [T/F OPT]Default FALSE value for [-loops]
  [T/F OPT]Default FALSE value for [-taboo]
  [T/F OPT]Default FALSE value for [-vary_omega]
  [T/F OPT]Default FALSE value for [-fine_hb_categories]
  [T/F OPT]Default FALSE value for [-geometric_sol]
  [T/F OPT]Default FALSE value for [-ex1]
  [T/F OPT]Default FALSE value for [-ex2]
  [T/F OPT]Default FALSE value for [-ex3]
  [T/F OPT]Default FALSE value for [-ex4]
  [T/F OPT]Default FALSE value for [-ex1aro]
  [T/F OPT]Default FALSE value for [-ex1aro_half]
  [T/F OPT]Default FALSE value for [-ex2aro_only]
  [T/F OPT]Default FALSE value for [-ex1aro_exposed]
  [T/F OPT]Default FALSE value for [-ex2aro_exposed]
  [T/F OPT]Default FALSE value for [-exOH]
  [INT OPT]Default value for [-extrachi_cutoff] 18
  [T/F OPT]Default FALSE value for [-rot_pert]
  [T/F OPT]Default FALSE value for [-rot_pert_input]
  [T/F OPT]Default FALSE value for [-exdb]
  [T/F OPT]Default FALSE value for [-rotamer_explosion]
  [T/F OPT]Default FALSE value for [-min_best_rots]
  [T/F OPT]Default FALSE value for [-rot_opt]
  [T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
  [T/F OPT]Default FALSE value for [-explicit_h2o]
  [T/F OPT]Default FALSE value for [-solvate]
  [T/F OPT]Default FALSE value for [-pH]
  [T/F OPT]Default FALSE value for [-try_both_his_tautomers]
  [T/F OPT]Default FALSE value for [-hydrate_dna]
  [T/F OPT]Default FALSE value for [-ex_dna_waters]
  [T/F OPT]Default FALSE value for [-minimize_rot]
  [T/F OPT]Default FALSE value for [-read_hetero_h2o]
  [T/F OPT]Default FALSE value for [-Wint_score_only]
  [T/F OPT]Default FALSE value for [-Wint_repack_only]
  [T/F OPT]Default FALSE value for [-ligand]
  [T/F OPT]Default FALSE value for [-enzyme_design]
  [T/F OPT]Default FALSE value for [-score_contact_flag]
  [T/F OPT]Default FALSE value for [-score_contact_weight]
  [T/F OPT]Default FALSE value for [-score_contact_threshold]
  [T/F OPT]Default FALSE value for [-scorefxn]
  default centroid scorefxn: 4
  default fullatom scorefxn: 12
  [INT OPT]Default value for [-run_level] 0
  [T/F OPT]Default FALSE value for [-silent]
  [T/F OPT]Default FALSE value for [-output_silent_gz]
  [T/F OPT]Default FALSE value for [-verbose]
  [T/F OPT]Default FALSE value for [-gush]
  [T/F OPT]Default FALSE value for [-yap]
  [T/F OPT]Default FALSE value for [-chat]
  [T/F OPT]Default FALSE value for [-inform]
  [T/F OPT]Default FALSE value for [-quiet]
  run level: 0
  [T/F OPT]Default FALSE value for [-benchmark]
  [T/F OPT]Default FALSE value for [-debug]
  [INT OPT]Default value for [-sym_des_units] 1
  [T/F OPT]Default FALSE value for [-mj_min]
  [REAL OPT]Default value for [-mod_hhrep_height] 1
  [REAL OPT]Default value for [-mod_hhrep_width] 1
  [REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
  [REAL OPT]Default value for [-mod_hhrep_exponent] 4
  [REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
  [REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
  [STR OPT]New value for [-s] sample.pdb.
  Starting structure: sample
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
  [STR OPT]Default value for [-atom_vdw_set] default.
  [T/F OPT]Default FALSE value for [-IUPAC]
  Atom_mode set to all
  [STR OPT]Default value for [-paircutoffs] paircutoffs.
  Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
  [T/F OPT]Default FALSE value for [-interface_ds]
  [T/F OPT]New TRUE value for [-decoystats]
  set_decoystats_flag: from,to F T
  [T/F OPT]New TRUE value for [-ds_outpdb_only]
  [T/F OPT]Default FALSE value for [-tight_core_analysis]
  [T/F OPT]Default FALSE value for [-decoyfeatures]
  [T/F OPT]Default FALSE value for [-t32s3]
  [T/F OPT]Default FALSE value for [-evolution]
  [T/F OPT]Default FALSE value for [-evol_recomb]
  [T/F OPT]Default FALSE value for [-profile]
  [T/F OPT]Default FALSE value for [-dummy_model]
  [T/F OPT]Default FALSE value for [-saxs_model]
  Profile defined from q = 0 to 1.
  [T/F OPT]Default FALSE value for [-new_centroid_packing]
  [REAL OPT]Default value for [-centroid_pack_weight] 2
  [T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
  [REAL OPT]Default value for [-cb_weight] 1
  [REAL OPT]Default value for [-localstrandpair_penalty] 0
  [REAL OPT]Default value for [-rsd_wt_helix] 1
  [REAL OPT]Default value for [-rsd_wt_loop] 1
  [REAL OPT]Default value for [-rsd_wt_strand] 1
  [REAL OPT]Default value for [-strand_dist_cutoff] 6.5
  [T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
  [REAL OPT]Default value for [-seq_sep_scale] 20
  [REAL OPT]Default value for [-max_strand_dist_cutoff] 12
  [T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
  [T/F OPT]Default FALSE value for [-handedness_score]
  [T/F OPT]Default FALSE value for [-barcode_mode]
  disabling all filters
  [REAL OPT]Default value for [-co] -1
  [REAL OPT]Default value for [-rms] -1
  [T/F OPT]Default FALSE value for [-repeatin]
  [T/F OPT]Default FALSE value for [-repeatout]
  [T/F OPT]Default FALSE value for [-clnt]
  requesting task from server
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