How to build a parallel version of rosetta++ (Rosetta2.3.0) ?

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    • #842
      Anonymous

        Hi Rosetta users,

        I’m using Rosetta 2.3.0. I want to build a parallel version. I installed MPICH and scons and modified some lines of basic.setting which is in rosetta++/tools/build/. I added the mpi bin, include amd lib path to the file and added a flag “Wno-long-long” to make mpicc and mpiCC work (since the cpmpiler always complains about that it doesn’t support ‘long long’ type). I also installed the rsh-version and configured it to make the work.

        My PC is a HP laptop (1 intel CORE2 cpu, 2 cores); my OS is Ret Hat Enterprise Linux 5.4; scons works fine when building a normal version rosetta++; mpich 1.2.7 is used; rsh-server-0.17-40.el5.i386.rpm is used (I created a file named hosts.equiv in /etc/, and put a line “localhost” in it. In the end, I reboot the rsh service).

        #########################

        scons ./bin mode=relese extras=mpi

        #########################

        Finally, I got a parallel version rosetta. After that, I tested the parallel version, like this:

        (A)
        mpirun -np 3 /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb

        OR like this

        (B)
        mpirun -np 3 /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb

        I found 3 rosetta.release processes at once, however, only one of them left after a short while. In (A), only the server node left; in (B), only the last node, i.e. here, the client 2 left to run. Below are parts of my log files (I also put them in a the attachments, however, you’ve to rename them after downloading and to unzip them.).

        Anybody can tell me how I can fix these? I relly need Rosetta 2.3.0 to run in parallel. Thanks in advance!!!

        Ming Liu, Ph.D from Beijing, China

        ###################################
        Log files !!!!!!!!!!!!!!!!

        ####################### The server node ####################
        ####################### This log file was gererated by calling the command (B) ############################
        this node is the server
        command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
        [T/F OPT]Default FALSE value for [-no_option_display]
        [T/F OPT]Default FALSE value for [-args_file]
        [STR OPT]Default value for [-paths] paths.txt.
        [T/F OPT]Default FALSE value for [-version]
        [T/F OPT]Default FALSE value for [-score]
        [T/F OPT]Default FALSE value for [-abinitio]
        [T/F OPT]Default FALSE value for [-refine]
        [T/F OPT]Default FALSE value for [-assemble]
        [T/F OPT]Default FALSE value for [-idealize]
        [T/F OPT]Default FALSE value for [-relax]
        [T/F OPT]Default FALSE value for [-abrelax]
        [T/F OPT]Default FALSE value for [-abrelax_mode]
        [T/F OPT]Default FALSE value for [-design]
        [T/F OPT]Default FALSE value for [-dock]
        [T/F OPT]Default FALSE value for [-membrane]
        [T/F OPT]Default FALSE value for [-loops]
        [T/F OPT]Default FALSE value for [-pdbstats]
        [T/F OPT]New TRUE value for [-interface]
        [T/F OPT]Default FALSE value for [-fake_native]
        [T/F OPT]Default FALSE value for [-docking_hb_stats]
        [T/F OPT]Default FALSE value for [-output_position_hetatm]
        [T/F OPT]Default FALSE value for [-ddg_bind_only]
        [STR OPT]New value for [-mutlist] sample_mutlist_all.
        [STR OPT]Default value for [-intout] INT.OUT.
        [T/F OPT]Default FALSE value for [-Wpack_only]
        [T/F OPT]Default FALSE value for [-Wint_only]
        [T/F OPT]Default FALSE value for [-pmut_scan]
        [T/F OPT]Default FALSE value for [-affin_incr]
        [T/F OPT]Default FALSE value for [-ala_scan_only]
        [T/F OPT]Default FALSE value for [-monomeric_protein]
        [T/F OPT]Default FALSE value for [-safe]
        [T/F OPT]Default FALSE value for [-output_structure]
        [T/F OPT]Default FALSE value for [-repack_neighbors]
        [T/F OPT]Default FALSE value for [-min_interface]
        [T/F OPT]Default FALSE value for [-relax_unbound]
        [T/F OPT]Default FALSE value for [-alter_spec_format]
        [T/F OPT]Default FALSE value for [-chain_energies]
        Rosetta mode: interface
        [T/F OPT]Default FALSE value for [-chain]
        [T/F OPT]Default FALSE value for [-protein]
        [T/F OPT]Default FALSE value for [-series]
        [INT OPT]Default value for [-nstruct] 1
        [T/F OPT]Default FALSE value for [-concatenate_pdbs]
        [T/F OPT]Default FALSE value for [-single_silent_writer]
        [T/F OPT]Default FALSE value for [-read_all_chains]
        [T/F OPT]Default FALSE value for [-preserve_header]
        [T/F OPT]Default FALSE value for [-use_pdb_numbering]
        [T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
        [T/F OPT]Default FALSE value for [-repack]
        [T/F OPT]Default FALSE value for [-no_optH]
        [T/F OPT]Default FALSE value for [-overwrite]
        [T/F OPT]Default FALSE value for [-output_pdb_gz]
        [T/F OPT]Default FALSE value for [-output_silent_gz]
        [T/F OPT]Default FALSE value for [-output_scorefile_gz]
        [T/F OPT]Default FALSE value for [-pose_silent_out]
        [T/F OPT]Default FALSE value for [-sasapack_bvalues]
        [T/F OPT]Default FALSE value for [-cenlist_values]
        [T/F OPT]Default FALSE value for [-termini]
        [T/F OPT]Default FALSE value for [-Nterminus]
        [T/F OPT]Default FALSE value for [-Cterminus]
        [T/F OPT]Default FALSE value for [-use_trie]
        [T/F OPT]Default FALSE value for [-no_trie]
        [T/F OPT]Default FALSE value for [-use_conformer]
        [T/F OPT]Default FALSE value for [-use_bbind_conformer]
        [T/F OPT]Default FALSE value for [-trials_trie]
        [T/F OPT]Default FALSE value for [-no_trials_trie]
        [T/F OPT]Default FALSE value for [-pose_relax]
        [T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
        [T/F OPT]Default FALSE value for [-read_interaction_graph]
        [T/F OPT]Default FALSE value for [-write_interaction_graph]
        [STR OPT]Default value for [-ig_file] .
        [T/F OPT]Default FALSE value for [-packer_precompute_only]
        [T/F OPT]Default FALSE value for [-tight_memory_restrictions]
        [T/F OPT]Default FALSE value for [-lazy_ig]
        [T/F OPT]Default FALSE value for [-linmem_ig]
        [T/F OPT]Default FALSE value for [-minimalist_ig]
        [T/F OPT]Default FALSE value for [-use_sasa_pack_score]
        [T/F OPT]Default FALSE value for [-output_dot_kinemage]
        [T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
        [T/F OPT]Default FALSE value for [-multi_cool_annealer]
        [T/F OPT]Default FALSE value for [-debug_annealer_design]
        [T/F OPT]Default FALSE value for [-no_his_his_pairE]
        [T/F OPT]Default FALSE value for [-silent_input]
        [T/F OPT]Default FALSE value for [-skip_scorefile_check]
        [T/F OPT]Default FALSE value for [-timer]
        [T/F OPT]Default FALSE value for [-count_attempts]
        [T/F OPT]Default FALSE value for [-status]
        [T/F OPT]Default FALSE value for [-decoy_status]
        [T/F OPT]Default FALSE value for [-ise_movie]
        [T/F OPT]Default FALSE value for [-output_all]
        [T/F OPT]Default FALSE value for [-output_chi_silent]
        [T/F OPT]Default FALSE value for [-accept_all]
        [T/F OPT]Default FALSE value for [-skip_missing_residues]
        [T/F OPT]Default FALSE value for [-use_input_sc]
        [T/F OPT]Default FALSE value for [-use_input_cb]
        [STR OPT]Default value for [-weightfile] none.
        [STR OPT]Default value for [-cst] cst.
        [STR OPT]Default value for [-dpl] dpl.
        [STR OPT]Default value for [-resfile] none.
        [STR OPT]Default value for [-equiv_resfile] none.
        [T/F OPT]Default FALSE value for [-auto_resfile]
        [T/F OPT]Default FALSE value for [-chain_inc]
        WARNING::
        constraints will not be used: query not defined
        by series_code,protein_name,and chain_id
        WARNING:: nstruct > 0 but output_coord F
        no pdb files will be output
        [T/F OPT]Default FALSE value for [-full_filename]
        [T/F OPT]Default FALSE value for [-map_sequence]
        [INT OPT]Default value for [-max_frags] 200
        [T/F OPT]Default FALSE value for [-output_centroids]
        [STR OPT]Default value for [-protein_name_prefix] .
        [STR OPT]Default value for [-frags_name_prefix] .
        [T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
        [T/F OPT]Default FALSE value for [-use_homolog_env_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-output_hbond_info]
        [T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
        [T/F OPT]Default FALSE value for [-monomer_input]
        [REAL OPT]Default value for [-vdw_reweight] 1
        [REAL OPT]Default value for [-env_reweight] 1
        [REAL OPT]Default value for [-pair_reweight] 1
        [REAL OPT]Default value for [-cb_reweight] 1
        [REAL OPT]Default value for [-sheet_reweight] 1
        [REAL OPT]Default value for [-ss_reweight] 1
        [REAL OPT]Default value for [-hs_reweight] 1
        [REAL OPT]Default value for [-rsigma_reweight] 1
        [REAL OPT]Default value for [-rg_reweight] 1
        [REAL OPT]Default value for [-pc_reweight] 1
        [REAL OPT]Default value for [-fa_atr_reweight] 1
        [REAL OPT]Default value for [-fa_rep_reweight] 1
        [REAL OPT]Default value for [-fa_dun_reweight ] 1
        [REAL OPT]Default value for [-fa_pair_reweight] 1
        [REAL OPT]Default value for [-fa_plane_reweight] 1
        [REAL OPT]Default value for [-fa_solv_reweight] 1
        [REAL OPT]Default value for [-fa_ref_reweight ] 1
        [REAL OPT]Default value for [-fa_pH_reweight] 1
        [REAL OPT]Default value for [-fa_h2o_reweight] 1
        [REAL OPT]Default value for [-fa_prob1b_reweight] 1
        [REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
        [REAL OPT]Default value for [-hb_srbb_reweight] 1
        [REAL OPT]Default value for [-hb_lrbb_reweight] 1
        [REAL OPT]Default value for [-hb_sc_reweight] 1
        [REAL OPT]Default value for [-chainbreak_reweight] 1
        [REAL OPT]Default value for [-electron_density_reweight] 1
        [REAL OPT]Default value for [-dummy_model_reweight] 1
        [REAL OPT]Default value for [-saxs_model_reweight] 1
        [REAL OPT]Default value for [-Wplane_total] 0
        [REAL OPT]Default value for [-barcode_reweight] 1
        [REAL OPT]Default value for [-barcode_energy_reweight] 1
        [T/F OPT]Default FALSE value for [-fa_max_dis]
        [T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
        [T/F OPT]Default FALSE value for [-no_hb_env_dep]
        [T/F OPT]Default FALSE value for [-find_disulf]
        [T/F OPT]Default FALSE value for [-fix_disulf]
        [T/F OPT]Default FALSE value for [-prna]
        [T/F OPT]Default FALSE value for [-enable_dna]
        [T/F OPT]Default FALSE value for [-enable_rna]
        [T/F OPT]Default FALSE value for [-dna_interface]
        [T/F OPT]Default FALSE value for [-enable_ligand_aa]
        [T/F OPT]Default FALSE value for [-phospho_ser]
        [T/F OPT]Default FALSE value for [-surface]
        [T/F OPT]Default FALSE value for [-loops]
        [T/F OPT]Default FALSE value for [-taboo]
        [T/F OPT]Default FALSE value for [-vary_omega]
        [T/F OPT]Default FALSE value for [-fine_hb_categories]
        [T/F OPT]Default FALSE value for [-geometric_sol]
        [T/F OPT]Default FALSE value for [-ex1]
        [T/F OPT]Default FALSE value for [-ex2]
        [T/F OPT]Default FALSE value for [-ex3]
        [T/F OPT]Default FALSE value for [-ex4]
        [T/F OPT]Default FALSE value for [-ex1aro]
        [T/F OPT]Default FALSE value for [-ex1aro_half]
        [T/F OPT]Default FALSE value for [-ex2aro_only]
        [T/F OPT]Default FALSE value for [-ex1aro_exposed]
        [T/F OPT]Default FALSE value for [-ex2aro_exposed]
        [T/F OPT]Default FALSE value for [-exOH]
        [INT OPT]Default value for [-extrachi_cutoff] 18
        [T/F OPT]Default FALSE value for [-rot_pert]
        [T/F OPT]Default FALSE value for [-rot_pert_input]
        [T/F OPT]Default FALSE value for [-exdb]
        [T/F OPT]Default FALSE value for [-rotamer_explosion]
        [T/F OPT]Default FALSE value for [-min_best_rots]
        [T/F OPT]Default FALSE value for [-rot_opt]
        [T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
        [T/F OPT]Default FALSE value for [-explicit_h2o]
        [T/F OPT]Default FALSE value for [-solvate]
        [T/F OPT]Default FALSE value for [-pH]
        [T/F OPT]Default FALSE value for [-try_both_his_tautomers]
        [T/F OPT]Default FALSE value for [-hydrate_dna]
        [T/F OPT]Default FALSE value for [-ex_dna_waters]
        [T/F OPT]Default FALSE value for [-minimize_rot]
        [T/F OPT]Default FALSE value for [-read_hetero_h2o]
        [T/F OPT]Default FALSE value for [-Wint_score_only]
        [T/F OPT]Default FALSE value for [-Wint_repack_only]
        [T/F OPT]Default FALSE value for [-ligand]
        [T/F OPT]Default FALSE value for [-enzyme_design]
        [T/F OPT]Default FALSE value for [-score_contact_flag]
        [T/F OPT]Default FALSE value for [-score_contact_weight]
        [T/F OPT]Default FALSE value for [-score_contact_threshold]
        [T/F OPT]Default FALSE value for [-scorefxn]
        default centroid scorefxn: 4
        default fullatom scorefxn: 12
        [INT OPT]Default value for [-run_level] 0
        [T/F OPT]Default FALSE value for [-silent]
        [T/F OPT]Default FALSE value for [-output_silent_gz]
        [T/F OPT]Default FALSE value for [-verbose]
        [T/F OPT]Default FALSE value for [-gush]
        [T/F OPT]Default FALSE value for [-yap]
        [T/F OPT]Default FALSE value for [-chat]
        [T/F OPT]Default FALSE value for [-inform]
        [T/F OPT]Default FALSE value for [-quiet]
        run level: 0
        [T/F OPT]Default FALSE value for [-benchmark]
        [T/F OPT]Default FALSE value for [-debug]
        [INT OPT]Default value for [-sym_des_units] 1
        [T/F OPT]Default FALSE value for [-mj_min]
        [REAL OPT]Default value for [-mod_hhrep_height] 1
        [REAL OPT]Default value for [-mod_hhrep_width] 1
        [REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
        [REAL OPT]Default value for [-mod_hhrep_exponent] 4
        [REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
        [REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
        [STR OPT]New value for [-s] sample.pdb.
        Starting structure: sample
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
        [STR OPT]Default value for [-atom_vdw_set] default.
        [T/F OPT]Default FALSE value for [-IUPAC]
        Atom_mode set to all
        [STR OPT]Default value for [-paircutoffs] paircutoffs.
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
        [T/F OPT]Default FALSE value for [-interface_ds]
        [T/F OPT]New TRUE value for [-decoystats]
        set_decoystats_flag: from,to F T
        [T/F OPT]New TRUE value for [-ds_outpdb_only]
        [T/F OPT]Default FALSE value for [-tight_core_analysis]
        [T/F OPT]Default FALSE value for [-decoyfeatures]
        [T/F OPT]Default FALSE value for [-t32s3]
        [T/F OPT]Default FALSE value for [-evolution]
        [T/F OPT]Default FALSE value for [-evol_recomb]
        [T/F OPT]Default FALSE value for [-profile]
        [T/F OPT]Default FALSE value for [-constant_seed]
        [T/F OPT]Default FALSE value for [-dummy_model]
        [T/F OPT]Default FALSE value for [-saxs_model]
        Profile defined from q = 0 to 1.
        [T/F OPT]Default FALSE value for [-new_centroid_packing]
        [REAL OPT]Default value for [-centroid_pack_weight] 2
        [T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
        [REAL OPT]Default value for [-cb_weight] 1
        [REAL OPT]Default value for [-localstrandpair_penalty] 0
        [REAL OPT]Default value for [-rsd_wt_helix] 1
        [REAL OPT]Default value for [-rsd_wt_loop] 1
        [REAL OPT]Default value for [-rsd_wt_strand] 1
        [REAL OPT]Default value for [-strand_dist_cutoff] 6.5
        [T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
        [REAL OPT]Default value for [-seq_sep_scale] 20
        [REAL OPT]Default value for [-max_strand_dist_cutoff] 12
        [T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
        [T/F OPT]Default FALSE value for [-handedness_score]
        [T/F OPT]Default FALSE value for [-barcode_mode]
        disabling all filters
        [REAL OPT]Default value for [-co] -1
        [REAL OPT]Default value for [-rms] -1
        [T/F OPT]Default FALSE value for [-repeatin]
        [T/F OPT]Default FALSE value for [-repeatout]
        [T/F OPT]Default FALSE value for [-clnt]
        [T/F OPT]Default FALSE value for [-constant_seed]
        reading starting structure: ./sample.pdb
        [T/F OPT]Default FALSE value for [-use_native_centroid]
        initializing full atom functions
        [T/F OPT]Default FALSE value for [-dna_weights]
        [T/F OPT]Default FALSE value for [-soft_rep]
        [T/F OPT]Default FALSE value for [-soft_rep_design]
        [T/F OPT]Default FALSE value for [-use_aw]
        [T/F OPT]Default FALSE value for [-use_bw]
        [T/F OPT]Default FALSE value for [-use_packing_etables_always]
        [T/F OPT]Default FALSE value for [-smooth_etable]
        [T/F OPT]Default FALSE value for [-reduce_templates]
        [T/F OPT]Default FALSE value for [-gen_born]
        [T/F OPT]Default FALSE value for [-small_radii]
        [STR OPT]Default value for [-fa_lj_rep_slope] highres.
        Starting energy table calculation
        Energy table parameter set: polh_aroh Revision: 14003 Date: 2007-04-06 14:24:40 -0400 (Fri, 06 Apr 2007)
        [T/F OPT]Default FALSE value for [-mod_hhrep]
        Finished calculating energy tables.
        [T/F OPT]Default FALSE value for [-mod_etable]
        [T/F OPT]Default FALSE value for [-input_etables]
        [T/F OPT]Default FALSE value for [-output_etables]
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/bbdep02.May.sortlib
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/plane_data_table_1015.dat
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/pdbpairstats_fine
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa_n
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Paa_pp
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/avgE_from_pdb
        Filling missing atoms
        optimizing missing atoms
        [T/F OPT]Default FALSE value for [-disallow_hbond_o4star]
        [T/F OPT]Default FALSE value for [-disallow_hbond_ho2star]
        Instantiating PDInteractionGraph
        optimizing hydrogen positions
        [T/F OPT]Default FALSE value for [-dun_sd_correction]
        Instantiating PDInteractionGraph
        [T/F OPT]Default FALSE value for [-simple_elec]
        [T/F OPT]Default FALSE value for [-record_annealer_trajectory]
        [T/F OPT]Default FALSE value for [-disallow_quench]
        WARNING:: end of pdb file reached: angle, secstruct, & res info not found
        Looking for dssp file: ./sample.dssp
        dssp file not found
        Looking for secondary structure assignment file: ./sample.ssa
        ssa file not found
        calculating secondary structure from torsion angles
        calculating secondary structure from internal DSSP calculation.
        [T/F OPT]Default FALSE value for [-use_input_bond]
        [T/F OPT]Default FALSE value for [-regions]
        Docking partners detected: Residues
        1- 222
        223- 358



        Docking partners: Residues
        1-222
        223-358

        Centroids:
        ( 29.562, 23.955, 18.127)
        ( 12.007, 19.613, 43.600)

        Centroid bond:
        ( 17.555, 4.342, -25.473)

        Docking basis vectors:
        ( 0.562, 0.139, -0.815)
        ( 0.827, -0.094, 0.554)
        ( 0.000, -0.986, -0.168)
        Contact point:
        ( 20.784, 21.784, 30.864)


        File: ./—-.cst not found
        Running without site constraints
        File: ./—-.dst not found
        Running without dist constraints
        [T/F OPT]Default FALSE value for [-apply_filters]
        [T/F OPT]Default FALSE value for [-knot_filter]
        [T/F OPT]Default FALSE value for [-poke_filter]
        [T/F OPT]Default FALSE value for [-score_contact_fullatom]
        [T/F OPT]Default FALSE value for [-long_range_hb_weight]
        [T/F OPT]Default FALSE value for [-short_range_hb_weight]
        [T/F OPT]Default FALSE value for [-rand_envpair_res_wt]
        [REAL OPT]Default value for [-parallel_weight] 1
        [REAL OPT]Default value for [-antiparallel_weight] 1
        [T/F OPT]Default FALSE value for [-rand_SS_wt]
        [T/F OPT]Default FALSE value for [-random_parallel_antiparallel]
        [T/F OPT]Default FALSE value for [-rand_cst_res_wt]
        [T/F OPT]Default FALSE value for [-use_barcode_to_score]
        [T/F OPT]Default FALSE value for [-ss_vdw]
        [T/F OPT]Default FALSE value for [-use_alpha_rama]
        [T/F OPT]Default FALSE value for [-saxs_model_score]
        [T/F OPT]Default FALSE value for [-ssweight_for_homolog]
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/SASA-masks.dat
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/SASA-angles.dat
        ========================================
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/sasa_offsets.txt
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/sasa_prob_cdf.txt
        [T/F OPT]Default FALSE value for [-t32s3]
        PACKNG: deleting curent protein_sasa oject
        [T/F OPT]Default FALSE value for [-packing_heavy_atoms_only]
        [T/F OPT]Default FALSE value for [-output_input_pdb]
        [T/F OPT]Default FALSE value for [-movie]
        [T/F OPT]Default FALSE value for [-trajectory]
        initializing full atom coordinates
        Protein Complex defined as Residues 1- 222 and 223- 358
        [T/F OPT]Default FALSE value for [-set_interface_cutoff]
        STARTING DECOYSTATS PARTNER COMPLEX AB:
        STARTING DECOYSTATS PARTNER B:
        STARTING DECOYSTATS PARTNER A:
        interface mode, reading mutlist: sample_mutlist_all
        interface mode, found number of mutated structures: 680
        examining mutant # 1
        [T/F OPT]Default FALSE value for [-pack_bump_cutoff]
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 2
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 3
        designing with this many rotamers 15
        Instantiating PDInteractionGraph
        examining mutant # 4
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 5
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 6
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 7
        designing with this many rotamers 22
        Instantiating PDInteractionGraph
        examining mutant # 8
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 9
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 10
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 11
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 12
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 13
        designing with this many rotamers 26
        Instantiating PDInteractionGraph
        examining mutant # 14
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 15
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 16
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 17
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 18
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 19
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 20
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 21
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 22
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 23
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 24
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 25
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 26
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 27
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 28
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 29
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 30
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 31
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 32
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 33
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 34
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 35
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 36
        designing with this many rotamers 20
        Instantiating PDInteractionGraph
        examining mutant # 37
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 38
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 39
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 40
        designing with this many rotamers 25
        Instantiating PDInteractionGraph
        examining mutant # 41
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 42
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 43
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 44
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 45
        designing with this many rotamers 19
        Instantiating PDInteractionGraph
        examining mutant # 46
        designing with this many rotamers 21
        Instantiating PDInteractionGraph
        examining mutant # 47
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 48
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 49
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 50
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 51
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 52
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 53
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 54
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 55
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 56
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 57
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 58
        designing with this many rotamers 20
        Instantiating PDInteractionGraph
        examining mutant # 59
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 60
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 61
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 62
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 63
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 64
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 65
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 66
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 67
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 68
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 69
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 70
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 71
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 72
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 73
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 74
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 75
        designing with this many rotamers 16
        Instantiating PDInteractionGraph
        examining mutant # 76
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 77
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 78
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 79
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 80
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 81
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 82
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 83
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 84
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 85
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 86
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 87
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 88
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 89
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 90
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 91
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 92
        designing with this many rotamers 16
        Instantiating PDInteractionGraph
        examining mutant # 93
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 94
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 95
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 96
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 97
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 98
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 99
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 100
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 101
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 102
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 103
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 104
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 105
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 106
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 107
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 108
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 109
        designing with this many rotamers 21
        Instantiating PDInteractionGraph
        examining mutant # 110
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 111
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 112
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 113
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 114
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 115
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 116
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 117
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 118
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 119
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 120
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 121
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 122
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 123
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 124
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 125
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 126
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 127
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 128
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 129
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 130
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 131
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 132
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 133
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 134
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 135
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 136
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 137
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 138
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 139
        designing with this many rotamers 19
        Instantiating PDInteractionGraph
        examining mutant # 140
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 141
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 142
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 143
        designing with this many rotamers 20
        Instantiating PDInteractionGraph
        examining mutant # 144
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 145
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 146
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 147
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 148
        designing with this many rotamers 19
        Instantiating PDInteractionGraph
        examining mutant # 149
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 150
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 151
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 152
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 153
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 154
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 155
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 156
        designing with this many rotamers 22
        Instantiating PDInteractionGraph
        examining mutant # 157
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 158
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 159
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 160
        designing with this many rotamers 25
        Instantiating PDInteractionGraph
        examining mutant # 161
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 162
        designing with this many rotamers 14
        Instantiating PDInteractionGraph
        examining mutant # 163
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 164
        designing with this many rotamers 21
        Instantiating PDInteractionGraph
        examining mutant # 165
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 166
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 167
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 168
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 169
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 170
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 171
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 172
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 173
        designing with this many rotamers 14
        Instantiating PDInteractionGraph
        examining mutant # 174
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 175
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 176
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 177
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 178
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 179
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 180
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 181
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 182
        designing with this many rotamers 16
        Instantiating PDInteractionGraph
        examining mutant # 183
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 184
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 185
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 186
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 187
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 188
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 189
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 190
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 191
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 192
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 193
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 194
        designing with this many rotamers 15
        Instantiating PDInteractionGraph
        examining mutant # 195
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 196
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 197
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 198
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 199
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 200
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 201
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 202
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 203
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 204
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 205
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 206
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 207
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 208
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 209
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 210
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 211
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 212
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 213
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 214
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 215
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 216
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 217
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 218
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 219
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 220
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 221
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 222
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 223
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 224
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 225
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 226
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 227
        designing with this many rotamers 19
        Instantiating PDInteractionGraph
        examining mutant # 228
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 229
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 230
        designing with this many rotamers 15
        Instantiating PDInteractionGraph
        examining mutant # 231
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 232
        designing with this many rotamers 17
        Instantiating PDInteractionGraph
        examining mutant # 233
        designing with this many rotamers 14
        Instantiating PDInteractionGraph
        examining mutant # 234
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 235
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 236
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 237
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 238
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 239
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 240
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 241
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 242
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 243
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 244
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 245
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 246
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 247
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 248
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 249
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 250
        designing with this many rotamers 19
        Instantiating PDInteractionGraph
        examining mutant # 251
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 252
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 253
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 254
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 255
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 256
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 257
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 258
        designing with this many rotamers 19
        Instantiating PDInteractionGraph
        examining mutant # 259
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 260
        designing with this many rotamers 7
        Instantiating PDInteractionGraph
        examining mutant # 261
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 262
        designing with this many rotamers 33
        Instantiating PDInteractionGraph
        examining mutant # 263
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 264
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 265
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 266
        designing with this many rotamers 21
        Instantiating PDInteractionGraph
        examining mutant # 267
        designing with this many rotamers 32
        Instantiating PDInteractionGraph
        examining mutant # 268
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 269
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 270
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 271
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 272
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 273
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 274
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 275
        designing with this many rotamers 14
        Instantiating PDInteractionGraph
        examining mutant # 276
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 277
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 278
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 279
        designing with this many rotamers 23
        Instantiating PDInteractionGraph
        examining mutant # 280
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 281
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 282
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 283
        designing with this many rotamers 16
        Instantiating PDInteractionGraph
        examining mutant # 284
        designing with this many rotamers 17
        Instantiating PDInteractionGraph
        examining mutant # 285
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 286
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 287
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 288
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 289
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 290
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 291
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 292
        designing with this many rotamers 17
        Instantiating PDInteractionGraph
        examining mutant # 293
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 294
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 295
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 296
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 297
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 298
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 299
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 300
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 301
        designing with this many rotamers 14
        Instantiating PDInteractionGraph
        examining mutant # 302
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 303
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 304
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 305
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 306
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 307
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 308
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 309
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 310
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 311
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 312
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 313
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 314
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 315
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 316
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 317
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 318
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 319
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 320
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 321
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 322
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 323
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 324
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 325
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 326
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 327
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 328
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 329
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 330
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 331
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 332
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 333
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 334
        designing with this many rotamers 12
        Instantiating PDInteractionGraph
        examining mutant # 335
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 336
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 337
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 338
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 339
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 340
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 341
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 342
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 343
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 344
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 345
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 346
        designing with this many rotamers 27
        Instantiating PDInteractionGraph
        examining mutant # 347
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 348
        designing with this many rotamers 14
        Instantiating PDInteractionGraph
        examining mutant # 349
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 350
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 351
        designing with this many rotamers 15
        Instantiating PDInteractionGraph
        examining mutant # 352
        designing with this many rotamers 27
        Instantiating PDInteractionGraph
        examining mutant # 353
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 354
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 355
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 356
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 357
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 358
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 359
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 360
        designing with this many rotamers 14
        Instantiating PDInteractionGraph
        examining mutant # 361
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 362
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 363
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 364
        designing with this many rotamers 16
        Instantiating PDInteractionGraph
        examining mutant # 365
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 366
        designing with this many rotamers 10
        Instantiating PDInteractionGraph
        examining mutant # 367
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 368
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 369
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 370
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 371
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 372
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 373
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 374
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 375
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 376
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 377
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 378
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 379
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 380
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 381
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 382
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 383
        designing with this many rotamers 13
        Instantiating PDInteractionGraph
        examining mutant # 384
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 385
        designing with this many rotamers 20
        Instantiating PDInteractionGraph
        examining mutant # 386
        designing with this many rotamers 18
        Instantiating PDInteractionGraph
        examining mutant # 387
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 388
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 389
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 390
        designing with this many rotamers 3
        Instantiating PDInteractionGraph
        examining mutant # 391
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 392
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        examining mutant # 393
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 394
        designing with this many rotamers 4
        Instantiating PDInteractionGraph
        examining mutant # 395
        designing with this many rotamers 6
        Instantiating PDInteractionGraph
        examining mutant # 396
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 397
        designing with this many rotamers 25
        Instantiating PDInteractionGraph
        examining mutant # 398
        designing with this many rotamers 5
        Instantiating PDInteractionGraph
        examining mutant # 399
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 400
        designing with this many rotamers 11
        Instantiating PDInteractionGraph
        examining mutant # 401
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 402
        designing with this many rotamers 19
        Instantiating PDInteractionGraph
        examining mutant # 403
        designing with this many rotamers 15
        Instantiating PDInteractionGraph
        examining mutant # 404
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 405
        designing with this many rotamers 9
        Instantiating PDInteractionGraph
        examining mutant # 406
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 407
        designing with this many rotamers 2
        Instantiating PDInteractionGraph
        examining mutant # 408
        designing with this many rotamers 8
        Instantiating PDInteractionGraph
        examining mutant # 409
        designing with this many rotamers 1
        Instantiating PDInteractionGraph
        p0_6135: p4_error: interrupt SIGx: 15
        p0_6135: (992.487903) net_send: could not write to fd=4, errno = 32 ############ I typed Ctrl + C here ###

        ####################### The client 1 node ####################
        ####################### This log file was gererated by calling the command (B) ############################
        client number is: 1
        command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
        [T/F OPT]Default FALSE value for [-no_option_display]
        [T/F OPT]Default FALSE value for [-args_file]
        [STR OPT]Default value for [-paths] paths.txt.
        [T/F OPT]Default FALSE value for [-version]
        [T/F OPT]Default FALSE value for [-score]
        [T/F OPT]Default FALSE value for [-abinitio]
        [T/F OPT]Default FALSE value for [-refine]
        [T/F OPT]Default FALSE value for [-assemble]
        [T/F OPT]Default FALSE value for [-idealize]
        [T/F OPT]Default FALSE value for [-relax]
        [T/F OPT]Default FALSE value for [-abrelax]
        [T/F OPT]Default FALSE value for [-abrelax_mode]
        [T/F OPT]Default FALSE value for [-design]
        [T/F OPT]Default FALSE value for [-dock]
        [T/F OPT]Default FALSE value for [-membrane]
        [T/F OPT]Default FALSE value for [-loops]
        [T/F OPT]Default FALSE value for [-pdbstats]
        [T/F OPT]New TRUE value for [-interface]
        [T/F OPT]Default FALSE value for [-fake_native]
        [T/F OPT]Default FALSE value for [-docking_hb_stats]
        [T/F OPT]Default FALSE value for [-output_position_hetatm]
        [T/F OPT]Default FALSE value for [-ddg_bind_only]
        [STR OPT]New value for [-mutlist] sample_mutlist_all.
        [STR OPT]Default value for [-intout] INT.OUT.
        [T/F OPT]Default FALSE value for [-Wpack_only]
        [T/F OPT]Default FALSE value for [-Wint_only]
        [T/F OPT]Default FALSE value for [-pmut_scan]
        [T/F OPT]Default FALSE value for [-affin_incr]
        [T/F OPT]Default FALSE value for [-ala_scan_only]
        [T/F OPT]Default FALSE value for [-monomeric_protein]
        [T/F OPT]Default FALSE value for [-safe]
        [T/F OPT]Default FALSE value for [-output_structure]
        [T/F OPT]Default FALSE value for [-repack_neighbors]
        [T/F OPT]Default FALSE value for [-min_interface]
        [T/F OPT]Default FALSE value for [-relax_unbound]
        [T/F OPT]Default FALSE value for [-alter_spec_format]
        [T/F OPT]Default FALSE value for [-chain_energies]
        Rosetta mode: interface
        [T/F OPT]Default FALSE value for [-chain]
        [T/F OPT]Default FALSE value for [-protein]
        [T/F OPT]Default FALSE value for [-series]
        [INT OPT]Default value for [-nstruct] 1
        [T/F OPT]Default FALSE value for [-concatenate_pdbs]
        [T/F OPT]Default FALSE value for [-single_silent_writer]
        [T/F OPT]Default FALSE value for [-read_all_chains]
        [T/F OPT]Default FALSE value for [-preserve_header]
        [T/F OPT]Default FALSE value for [-use_pdb_numbering]
        [T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
        [T/F OPT]Default FALSE value for [-repack]
        [T/F OPT]Default FALSE value for [-no_optH]
        [T/F OPT]Default FALSE value for [-overwrite]
        [T/F OPT]Default FALSE value for [-output_pdb_gz]
        [T/F OPT]Default FALSE value for [-output_silent_gz]
        [T/F OPT]Default FALSE value for [-output_scorefile_gz]
        [T/F OPT]Default FALSE value for [-pose_silent_out]
        [T/F OPT]Default FALSE value for [-sasapack_bvalues]
        [T/F OPT]Default FALSE value for [-cenlist_values]
        [T/F OPT]Default FALSE value for [-termini]
        [T/F OPT]Default FALSE value for [-Nterminus]
        [T/F OPT]Default FALSE value for [-Cterminus]
        [T/F OPT]Default FALSE value for [-use_trie]
        [T/F OPT]Default FALSE value for [-no_trie]
        [T/F OPT]Default FALSE value for [-use_conformer]
        [T/F OPT]Default FALSE value for [-use_bbind_conformer]
        [T/F OPT]Default FALSE value for [-trials_trie]
        [T/F OPT]Default FALSE value for [-no_trials_trie]
        [T/F OPT]Default FALSE value for [-pose_relax]
        [T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
        [T/F OPT]Default FALSE value for [-read_interaction_graph]
        [T/F OPT]Default FALSE value for [-write_interaction_graph]
        [STR OPT]Default value for [-ig_file] .
        [T/F OPT]Default FALSE value for [-packer_precompute_only]
        [T/F OPT]Default FALSE value for [-tight_memory_restrictions]
        [T/F OPT]Default FALSE value for [-lazy_ig]
        [T/F OPT]Default FALSE value for [-linmem_ig]
        [T/F OPT]Default FALSE value for [-minimalist_ig]
        [T/F OPT]Default FALSE value for [-use_sasa_pack_score]
        [T/F OPT]Default FALSE value for [-output_dot_kinemage]
        [T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
        [T/F OPT]Default FALSE value for [-multi_cool_annealer]
        [T/F OPT]Default FALSE value for [-debug_annealer_design]
        [T/F OPT]Default FALSE value for [-no_his_his_pairE]
        [T/F OPT]Default FALSE value for [-silent_input]
        [T/F OPT]Default FALSE value for [-skip_scorefile_check]
        [T/F OPT]Default FALSE value for [-timer]
        [T/F OPT]Default FALSE value for [-count_attempts]
        [T/F OPT]Default FALSE value for [-status]
        [T/F OPT]Default FALSE value for [-decoy_status]
        [T/F OPT]Default FALSE value for [-ise_movie]
        [T/F OPT]Default FALSE value for [-output_all]
        [T/F OPT]Default FALSE value for [-output_chi_silent]
        [T/F OPT]Default FALSE value for [-accept_all]
        [T/F OPT]Default FALSE value for [-skip_missing_residues]
        [T/F OPT]Default FALSE value for [-use_input_sc]
        [T/F OPT]Default FALSE value for [-use_input_cb]
        [STR OPT]Default value for [-weightfile] none.
        [STR OPT]Default value for [-cst] cst.
        [STR OPT]Default value for [-dpl] dpl.
        [STR OPT]Default value for [-resfile] none.
        [STR OPT]Default value for [-equiv_resfile] none.
        [T/F OPT]Default FALSE value for [-auto_resfile]
        [T/F OPT]Default FALSE value for [-chain_inc]
        WARNING::
        constraints will not be used: query not defined
        by series_code,protein_name,and chain_id
        WARNING:: nstruct > 0 but output_coord F
        no pdb files will be output
        [T/F OPT]Default FALSE value for [-full_filename]
        [T/F OPT]Default FALSE value for [-map_sequence]
        [INT OPT]Default value for [-max_frags] 200
        [T/F OPT]Default FALSE value for [-output_centroids]
        [STR OPT]Default value for [-protein_name_prefix] .
        [STR OPT]Default value for [-frags_name_prefix] .
        [T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
        [T/F OPT]Default FALSE value for [-use_homolog_env_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-output_hbond_info]
        [T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
        [T/F OPT]Default FALSE value for [-monomer_input]
        [REAL OPT]Default value for [-vdw_reweight] 1
        [REAL OPT]Default value for [-env_reweight] 1
        [REAL OPT]Default value for [-pair_reweight] 1
        [REAL OPT]Default value for [-cb_reweight] 1
        [REAL OPT]Default value for [-sheet_reweight] 1
        [REAL OPT]Default value for [-ss_reweight] 1
        [REAL OPT]Default value for [-hs_reweight] 1
        [REAL OPT]Default value for [-rsigma_reweight] 1
        [REAL OPT]Default value for [-rg_reweight] 1
        [REAL OPT]Default value for [-pc_reweight] 1
        [REAL OPT]Default value for [-fa_atr_reweight] 1
        [REAL OPT]Default value for [-fa_rep_reweight] 1
        [REAL OPT]Default value for [-fa_dun_reweight ] 1
        [REAL OPT]Default value for [-fa_pair_reweight] 1
        [REAL OPT]Default value for [-fa_plane_reweight] 1
        [REAL OPT]Default value for [-fa_solv_reweight] 1
        [REAL OPT]Default value for [-fa_ref_reweight ] 1
        [REAL OPT]Default value for [-fa_pH_reweight] 1
        [REAL OPT]Default value for [-fa_h2o_reweight] 1
        [REAL OPT]Default value for [-fa_prob1b_reweight] 1
        [REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
        [REAL OPT]Default value for [-hb_srbb_reweight] 1
        [REAL OPT]Default value for [-hb_lrbb_reweight] 1
        [REAL OPT]Default value for [-hb_sc_reweight] 1
        [REAL OPT]Default value for [-chainbreak_reweight] 1
        [REAL OPT]Default value for [-electron_density_reweight] 1
        [REAL OPT]Default value for [-dummy_model_reweight] 1
        [REAL OPT]Default value for [-saxs_model_reweight] 1
        [REAL OPT]Default value for [-Wplane_total] 0
        [REAL OPT]Default value for [-barcode_reweight] 1
        [REAL OPT]Default value for [-barcode_energy_reweight] 1
        [T/F OPT]Default FALSE value for [-fa_max_dis]
        [T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
        [T/F OPT]Default FALSE value for [-no_hb_env_dep]
        [T/F OPT]Default FALSE value for [-find_disulf]
        [T/F OPT]Default FALSE value for [-fix_disulf]
        [T/F OPT]Default FALSE value for [-prna]
        [T/F OPT]Default FALSE value for [-enable_dna]
        [T/F OPT]Default FALSE value for [-enable_rna]
        [T/F OPT]Default FALSE value for [-dna_interface]
        [T/F OPT]Default FALSE value for [-enable_ligand_aa]
        [T/F OPT]Default FALSE value for [-phospho_ser]
        [T/F OPT]Default FALSE value for [-surface]
        [T/F OPT]Default FALSE value for [-loops]
        [T/F OPT]Default FALSE value for [-taboo]
        [T/F OPT]Default FALSE value for [-vary_omega]
        [T/F OPT]Default FALSE value for [-fine_hb_categories]
        [T/F OPT]Default FALSE value for [-geometric_sol]
        [T/F OPT]Default FALSE value for [-ex1]
        [T/F OPT]Default FALSE value for [-ex2]
        [T/F OPT]Default FALSE value for [-ex3]
        [T/F OPT]Default FALSE value for [-ex4]
        [T/F OPT]Default FALSE value for [-ex1aro]
        [T/F OPT]Default FALSE value for [-ex1aro_half]
        [T/F OPT]Default FALSE value for [-ex2aro_only]
        [T/F OPT]Default FALSE value for [-ex1aro_exposed]
        [T/F OPT]Default FALSE value for [-ex2aro_exposed]
        [T/F OPT]Default FALSE value for [-exOH]
        [INT OPT]Default value for [-extrachi_cutoff] 18
        [T/F OPT]Default FALSE value for [-rot_pert]
        [T/F OPT]Default FALSE value for [-rot_pert_input]
        [T/F OPT]Default FALSE value for [-exdb]
        [T/F OPT]Default FALSE value for [-rotamer_explosion]
        [T/F OPT]Default FALSE value for [-min_best_rots]
        [T/F OPT]Default FALSE value for [-rot_opt]
        [T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
        [T/F OPT]Default FALSE value for [-explicit_h2o]
        [T/F OPT]Default FALSE value for [-solvate]
        [T/F OPT]Default FALSE value for [-pH]
        [T/F OPT]Default FALSE value for [-try_both_his_tautomers]
        [T/F OPT]Default FALSE value for [-hydrate_dna]
        [T/F OPT]Default FALSE value for [-ex_dna_waters]
        [T/F OPT]Default FALSE value for [-minimize_rot]
        [T/F OPT]Default FALSE value for [-read_hetero_h2o]
        [T/F OPT]Default FALSE value for [-Wint_score_only]
        [T/F OPT]Default FALSE value for [-Wint_repack_only]
        [T/F OPT]Default FALSE value for [-ligand]
        [T/F OPT]Default FALSE value for [-enzyme_design]
        [T/F OPT]Default FALSE value for [-score_contact_flag]
        [T/F OPT]Default FALSE value for [-score_contact_weight]
        [T/F OPT]Default FALSE value for [-score_contact_threshold]
        [T/F OPT]Default FALSE value for [-scorefxn]
        default centroid scorefxn: 4
        default fullatom scorefxn: 12
        [INT OPT]Default value for [-run_level] 0
        [T/F OPT]Default FALSE value for [-silent]
        [T/F OPT]Default FALSE value for [-output_silent_gz]
        [T/F OPT]Default FALSE value for [-verbose]
        [T/F OPT]Default FALSE value for [-gush]
        [T/F OPT]Default FALSE value for [-yap]
        [T/F OPT]Default FALSE value for [-chat]
        [T/F OPT]Default FALSE value for [-inform]
        [T/F OPT]Default FALSE value for [-quiet]
        run level: 0
        [T/F OPT]Default FALSE value for [-benchmark]
        [T/F OPT]Default FALSE value for [-debug]
        [INT OPT]Default value for [-sym_des_units] 1
        [T/F OPT]Default FALSE value for [-mj_min]
        [REAL OPT]Default value for [-mod_hhrep_height] 1
        [REAL OPT]Default value for [-mod_hhrep_width] 1
        [REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
        [REAL OPT]Default value for [-mod_hhrep_exponent] 4
        [REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
        [REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
        [STR OPT]New value for [-s] sample.pdb.
        Starting structure: sample
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
        [STR OPT]Default value for [-atom_vdw_set] default.
        [T/F OPT]Default FALSE value for [-IUPAC]
        Atom_mode set to all
        [STR OPT]Default value for [-paircutoffs] paircutoffs.
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
        [T/F OPT]Default FALSE value for [-interface_ds]
        [T/F OPT]New TRUE value for [-decoystats]
        set_decoystats_flag: from,to F T
        [T/F OPT]New TRUE value for [-ds_outpdb_only]
        [T/F OPT]Default FALSE value for [-tight_core_analysis]
        [T/F OPT]Default FALSE value for [-decoyfeatures]
        [T/F OPT]Default FALSE value for [-t32s3]
        [T/F OPT]Default FALSE value for [-evolution]
        [T/F OPT]Default FALSE value for [-evol_recomb]
        [T/F OPT]Default FALSE value for [-profile]
        [T/F OPT]Default FALSE value for [-dummy_model]
        [T/F OPT]Default FALSE value for [-saxs_model]
        Profile defined from q = 0 to 1.
        [T/F OPT]Default FALSE value for [-new_centroid_packing]
        [REAL OPT]Default value for [-centroid_pack_weight] 2
        [T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
        [REAL OPT]Default value for [-cb_weight] 1
        [REAL OPT]Default value for [-localstrandpair_penalty] 0
        [REAL OPT]Default value for [-rsd_wt_helix] 1
        [REAL OPT]Default value for [-rsd_wt_loop] 1
        [REAL OPT]Default value for [-rsd_wt_strand] 1
        [REAL OPT]Default value for [-strand_dist_cutoff] 6.5
        [T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
        [REAL OPT]Default value for [-seq_sep_scale] 20
        [REAL OPT]Default value for [-max_strand_dist_cutoff] 12
        [T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
        [T/F OPT]Default FALSE value for [-handedness_score]
        [T/F OPT]Default FALSE value for [-barcode_mode]
        disabling all filters
        [REAL OPT]Default value for [-co] -1
        [REAL OPT]Default value for [-rms] -1
        [T/F OPT]Default FALSE value for [-repeatin]
        [T/F OPT]Default FALSE value for [-repeatout]
        [T/F OPT]Default FALSE value for [-clnt]
        requesting task from server

        ####################### The client 2 node ####################
        ####################### This log file was gererated by calling the command (B) ############################
        client number is: 2
        command executed: /home/knight/softwares/Rosetta-2.3.0/rosetta++/bin/rosetta.release -mpi_task_distribution -interface -decoystats -ds_outpdb_only -mutlist sample_mutlist_all -s sample.pdb
        [T/F OPT]Default FALSE value for [-no_option_display]
        [T/F OPT]Default FALSE value for [-args_file]
        [STR OPT]Default value for [-paths] paths.txt.
        [T/F OPT]Default FALSE value for [-version]
        [T/F OPT]Default FALSE value for [-score]
        [T/F OPT]Default FALSE value for [-abinitio]
        [T/F OPT]Default FALSE value for [-refine]
        [T/F OPT]Default FALSE value for [-assemble]
        [T/F OPT]Default FALSE value for [-idealize]
        [T/F OPT]Default FALSE value for [-relax]
        [T/F OPT]Default FALSE value for [-abrelax]
        [T/F OPT]Default FALSE value for [-abrelax_mode]
        [T/F OPT]Default FALSE value for [-design]
        [T/F OPT]Default FALSE value for [-dock]
        [T/F OPT]Default FALSE value for [-membrane]
        [T/F OPT]Default FALSE value for [-loops]
        [T/F OPT]Default FALSE value for [-pdbstats]
        [T/F OPT]New TRUE value for [-interface]
        [T/F OPT]Default FALSE value for [-fake_native]
        [T/F OPT]Default FALSE value for [-docking_hb_stats]
        [T/F OPT]Default FALSE value for [-output_position_hetatm]
        [T/F OPT]Default FALSE value for [-ddg_bind_only]
        [STR OPT]New value for [-mutlist] sample_mutlist_all.
        [STR OPT]Default value for [-intout] INT.OUT.
        [T/F OPT]Default FALSE value for [-Wpack_only]
        [T/F OPT]Default FALSE value for [-Wint_only]
        [T/F OPT]Default FALSE value for [-pmut_scan]
        [T/F OPT]Default FALSE value for [-affin_incr]
        [T/F OPT]Default FALSE value for [-ala_scan_only]
        [T/F OPT]Default FALSE value for [-monomeric_protein]
        [T/F OPT]Default FALSE value for [-safe]
        [T/F OPT]Default FALSE value for [-output_structure]
        [T/F OPT]Default FALSE value for [-repack_neighbors]
        [T/F OPT]Default FALSE value for [-min_interface]
        [T/F OPT]Default FALSE value for [-relax_unbound]
        [T/F OPT]Default FALSE value for [-alter_spec_format]
        [T/F OPT]Default FALSE value for [-chain_energies]
        Rosetta mode: interface
        [T/F OPT]Default FALSE value for [-chain]
        [T/F OPT]Default FALSE value for [-protein]
        [T/F OPT]Default FALSE value for [-series]
        [INT OPT]Default value for [-nstruct] 1
        [T/F OPT]Default FALSE value for [-concatenate_pdbs]
        [T/F OPT]Default FALSE value for [-single_silent_writer]
        [T/F OPT]Default FALSE value for [-read_all_chains]
        [T/F OPT]Default FALSE value for [-preserve_header]
        [T/F OPT]Default FALSE value for [-use_pdb_numbering]
        [T/F OPT]Default FALSE value for [-flip_symmetric_sidechains]
        [T/F OPT]Default FALSE value for [-repack]
        [T/F OPT]Default FALSE value for [-no_optH]
        [T/F OPT]Default FALSE value for [-overwrite]
        [T/F OPT]Default FALSE value for [-output_pdb_gz]
        [T/F OPT]Default FALSE value for [-output_silent_gz]
        [T/F OPT]Default FALSE value for [-output_scorefile_gz]
        [T/F OPT]Default FALSE value for [-pose_silent_out]
        [T/F OPT]Default FALSE value for [-sasapack_bvalues]
        [T/F OPT]Default FALSE value for [-cenlist_values]
        [T/F OPT]Default FALSE value for [-termini]
        [T/F OPT]Default FALSE value for [-Nterminus]
        [T/F OPT]Default FALSE value for [-Cterminus]
        [T/F OPT]Default FALSE value for [-use_trie]
        [T/F OPT]Default FALSE value for [-no_trie]
        [T/F OPT]Default FALSE value for [-use_conformer]
        [T/F OPT]Default FALSE value for [-use_bbind_conformer]
        [T/F OPT]Default FALSE value for [-trials_trie]
        [T/F OPT]Default FALSE value for [-no_trials_trie]
        [T/F OPT]Default FALSE value for [-pose_relax]
        [T/F OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
        [T/F OPT]Default FALSE value for [-read_interaction_graph]
        [T/F OPT]Default FALSE value for [-write_interaction_graph]
        [STR OPT]Default value for [-ig_file] .
        [T/F OPT]Default FALSE value for [-packer_precompute_only]
        [T/F OPT]Default FALSE value for [-tight_memory_restrictions]
        [T/F OPT]Default FALSE value for [-lazy_ig]
        [T/F OPT]Default FALSE value for [-linmem_ig]
        [T/F OPT]Default FALSE value for [-minimalist_ig]
        [T/F OPT]Default FALSE value for [-use_sasa_pack_score]
        [T/F OPT]Default FALSE value for [-output_dot_kinemage]
        [T/F OPT]Default FALSE value for [-pack_low_temp_annealing]
        [T/F OPT]Default FALSE value for [-multi_cool_annealer]
        [T/F OPT]Default FALSE value for [-debug_annealer_design]
        [T/F OPT]Default FALSE value for [-no_his_his_pairE]
        [T/F OPT]Default FALSE value for [-silent_input]
        [T/F OPT]Default FALSE value for [-skip_scorefile_check]
        [T/F OPT]Default FALSE value for [-timer]
        [T/F OPT]Default FALSE value for [-count_attempts]
        [T/F OPT]Default FALSE value for [-status]
        [T/F OPT]Default FALSE value for [-decoy_status]
        [T/F OPT]Default FALSE value for [-ise_movie]
        [T/F OPT]Default FALSE value for [-output_all]
        [T/F OPT]Default FALSE value for [-output_chi_silent]
        [T/F OPT]Default FALSE value for [-accept_all]
        [T/F OPT]Default FALSE value for [-skip_missing_residues]
        [T/F OPT]Default FALSE value for [-use_input_sc]
        [T/F OPT]Default FALSE value for [-use_input_cb]
        [STR OPT]Default value for [-weightfile] none.
        [STR OPT]Default value for [-cst] cst.
        [STR OPT]Default value for [-dpl] dpl.
        [STR OPT]Default value for [-resfile] none.
        [STR OPT]Default value for [-equiv_resfile] none.
        [T/F OPT]Default FALSE value for [-auto_resfile]
        [T/F OPT]Default FALSE value for [-chain_inc]
        WARNING::
        constraints will not be used: query not defined
        by series_code,protein_name,and chain_id
        WARNING:: nstruct > 0 but output_coord F
        no pdb files will be output
        [T/F OPT]Default FALSE value for [-full_filename]
        [T/F OPT]Default FALSE value for [-map_sequence]
        [INT OPT]Default value for [-max_frags] 200
        [T/F OPT]Default FALSE value for [-output_centroids]
        [STR OPT]Default value for [-protein_name_prefix] .
        [STR OPT]Default value for [-frags_name_prefix] .
        [T/F OPT]Default FALSE value for [-protein_name_prefix_homolog]
        [T/F OPT]Default FALSE value for [-use_homolog_env_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_pair_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats]
        [T/F OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
        [T/F OPT]Default FALSE value for [-output_hbond_info]
        [T/F OPT]Default FALSE value for [-output_interface_hbonds_only]
        [T/F OPT]Default FALSE value for [-monomer_input]
        [REAL OPT]Default value for [-vdw_reweight] 1
        [REAL OPT]Default value for [-env_reweight] 1
        [REAL OPT]Default value for [-pair_reweight] 1
        [REAL OPT]Default value for [-cb_reweight] 1
        [REAL OPT]Default value for [-sheet_reweight] 1
        [REAL OPT]Default value for [-ss_reweight] 1
        [REAL OPT]Default value for [-hs_reweight] 1
        [REAL OPT]Default value for [-rsigma_reweight] 1
        [REAL OPT]Default value for [-rg_reweight] 1
        [REAL OPT]Default value for [-pc_reweight] 1
        [REAL OPT]Default value for [-fa_atr_reweight] 1
        [REAL OPT]Default value for [-fa_rep_reweight] 1
        [REAL OPT]Default value for [-fa_dun_reweight ] 1
        [REAL OPT]Default value for [-fa_pair_reweight] 1
        [REAL OPT]Default value for [-fa_plane_reweight] 1
        [REAL OPT]Default value for [-fa_solv_reweight] 1
        [REAL OPT]Default value for [-fa_ref_reweight ] 1
        [REAL OPT]Default value for [-fa_pH_reweight] 1
        [REAL OPT]Default value for [-fa_h2o_reweight] 1
        [REAL OPT]Default value for [-fa_prob1b_reweight] 1
        [REAL OPT]Default value for [-fa_gb_elec_reweigh] 1
        [REAL OPT]Default value for [-hb_srbb_reweight] 1
        [REAL OPT]Default value for [-hb_lrbb_reweight] 1
        [REAL OPT]Default value for [-hb_sc_reweight] 1
        [REAL OPT]Default value for [-chainbreak_reweight] 1
        [REAL OPT]Default value for [-electron_density_reweight] 1
        [REAL OPT]Default value for [-dummy_model_reweight] 1
        [REAL OPT]Default value for [-saxs_model_reweight] 1
        [REAL OPT]Default value for [-Wplane_total] 0
        [REAL OPT]Default value for [-barcode_reweight] 1
        [REAL OPT]Default value for [-barcode_energy_reweight] 1
        [T/F OPT]Default FALSE value for [-fa_max_dis]
        [T/F OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
        [T/F OPT]Default FALSE value for [-no_hb_env_dep]
        [T/F OPT]Default FALSE value for [-find_disulf]
        [T/F OPT]Default FALSE value for [-fix_disulf]
        [T/F OPT]Default FALSE value for [-prna]
        [T/F OPT]Default FALSE value for [-enable_dna]
        [T/F OPT]Default FALSE value for [-enable_rna]
        [T/F OPT]Default FALSE value for [-dna_interface]
        [T/F OPT]Default FALSE value for [-enable_ligand_aa]
        [T/F OPT]Default FALSE value for [-phospho_ser]
        [T/F OPT]Default FALSE value for [-surface]
        [T/F OPT]Default FALSE value for [-loops]
        [T/F OPT]Default FALSE value for [-taboo]
        [T/F OPT]Default FALSE value for [-vary_omega]
        [T/F OPT]Default FALSE value for [-fine_hb_categories]
        [T/F OPT]Default FALSE value for [-geometric_sol]
        [T/F OPT]Default FALSE value for [-ex1]
        [T/F OPT]Default FALSE value for [-ex2]
        [T/F OPT]Default FALSE value for [-ex3]
        [T/F OPT]Default FALSE value for [-ex4]
        [T/F OPT]Default FALSE value for [-ex1aro]
        [T/F OPT]Default FALSE value for [-ex1aro_half]
        [T/F OPT]Default FALSE value for [-ex2aro_only]
        [T/F OPT]Default FALSE value for [-ex1aro_exposed]
        [T/F OPT]Default FALSE value for [-ex2aro_exposed]
        [T/F OPT]Default FALSE value for [-exOH]
        [INT OPT]Default value for [-extrachi_cutoff] 18
        [T/F OPT]Default FALSE value for [-rot_pert]
        [T/F OPT]Default FALSE value for [-rot_pert_input]
        [T/F OPT]Default FALSE value for [-exdb]
        [T/F OPT]Default FALSE value for [-rotamer_explosion]
        [T/F OPT]Default FALSE value for [-min_best_rots]
        [T/F OPT]Default FALSE value for [-rot_opt]
        [T/F OPT]Default FALSE value for [-use_electrostatic_repulsion]
        [T/F OPT]Default FALSE value for [-explicit_h2o]
        [T/F OPT]Default FALSE value for [-solvate]
        [T/F OPT]Default FALSE value for [-pH]
        [T/F OPT]Default FALSE value for [-try_both_his_tautomers]
        [T/F OPT]Default FALSE value for [-hydrate_dna]
        [T/F OPT]Default FALSE value for [-ex_dna_waters]
        [T/F OPT]Default FALSE value for [-minimize_rot]
        [T/F OPT]Default FALSE value for [-read_hetero_h2o]
        [T/F OPT]Default FALSE value for [-Wint_score_only]
        [T/F OPT]Default FALSE value for [-Wint_repack_only]
        [T/F OPT]Default FALSE value for [-ligand]
        [T/F OPT]Default FALSE value for [-enzyme_design]
        [T/F OPT]Default FALSE value for [-score_contact_flag]
        [T/F OPT]Default FALSE value for [-score_contact_weight]
        [T/F OPT]Default FALSE value for [-score_contact_threshold]
        [T/F OPT]Default FALSE value for [-scorefxn]
        default centroid scorefxn: 4
        default fullatom scorefxn: 12
        [INT OPT]Default value for [-run_level] 0
        [T/F OPT]Default FALSE value for [-silent]
        [T/F OPT]Default FALSE value for [-output_silent_gz]
        [T/F OPT]Default FALSE value for [-verbose]
        [T/F OPT]Default FALSE value for [-gush]
        [T/F OPT]Default FALSE value for [-yap]
        [T/F OPT]Default FALSE value for [-chat]
        [T/F OPT]Default FALSE value for [-inform]
        [T/F OPT]Default FALSE value for [-quiet]
        run level: 0
        [T/F OPT]Default FALSE value for [-benchmark]
        [T/F OPT]Default FALSE value for [-debug]
        [INT OPT]Default value for [-sym_des_units] 1
        [T/F OPT]Default FALSE value for [-mj_min]
        [REAL OPT]Default value for [-mod_hhrep_height] 1
        [REAL OPT]Default value for [-mod_hhrep_width] 1
        [REAL OPT]Default value for [-mod_hhrep_center] 2.79999995
        [REAL OPT]Default value for [-mod_hhrep_exponent] 4
        [REAL OPT]Default value for [-smooth_etable_ljweight] 1.15999997
        [REAL OPT]Default value for [-smooth_etable_solvweight] 1.5
        [STR OPT]New value for [-s] sample.pdb.
        Starting structure: sample
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.HS.resmooth
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/phi.theta.36.SS.resmooth
        [STR OPT]Default value for [-atom_vdw_set] default.
        [T/F OPT]Default FALSE value for [-IUPAC]
        Atom_mode set to all
        [STR OPT]Default value for [-paircutoffs] paircutoffs.
        Reading /home/knight/softwares/Rosetta-2.3.0/rosetta_database/paircutoffs
        [T/F OPT]Default FALSE value for [-interface_ds]
        [T/F OPT]New TRUE value for [-decoystats]
        set_decoystats_flag: from,to F T
        [T/F OPT]New TRUE value for [-ds_outpdb_only]
        [T/F OPT]Default FALSE value for [-tight_core_analysis]
        [T/F OPT]Default FALSE value for [-decoyfeatures]
        [T/F OPT]Default FALSE value for [-t32s3]
        [T/F OPT]Default FALSE value for [-evolution]
        [T/F OPT]Default FALSE value for [-evol_recomb]
        [T/F OPT]Default FALSE value for [-profile]
        [T/F OPT]Default FALSE value for [-dummy_model]
        [T/F OPT]Default FALSE value for [-saxs_model]
        Profile defined from q = 0 to 1.
        [T/F OPT]Default FALSE value for [-new_centroid_packing]
        [REAL OPT]Default value for [-centroid_pack_weight] 2
        [T/F OPT]Default FALSE value for [-separate_centroid_pack_score]
        [REAL OPT]Default value for [-cb_weight] 1
        [REAL OPT]Default value for [-localstrandpair_penalty] 0
        [REAL OPT]Default value for [-rsd_wt_helix] 1
        [REAL OPT]Default value for [-rsd_wt_loop] 1
        [REAL OPT]Default value for [-rsd_wt_strand] 1
        [REAL OPT]Default value for [-strand_dist_cutoff] 6.5
        [T/F OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
        [REAL OPT]Default value for [-seq_sep_scale] 20
        [REAL OPT]Default value for [-max_strand_dist_cutoff] 12
        [T/F OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
        [T/F OPT]Default FALSE value for [-handedness_score]
        [T/F OPT]Default FALSE value for [-barcode_mode]
        disabling all filters
        [REAL OPT]Default value for [-co] -1
        [REAL OPT]Default value for [-rms] -1
        [T/F OPT]Default FALSE value for [-repeatin]
        [T/F OPT]Default FALSE value for [-repeatout]
        [T/F OPT]Default FALSE value for [-clnt]
        requesting task from server

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