How to make .frags files

[Anonymous]

Hello! 

I am working through the online pyrosetta tutorial in jupyter notebooks, and they request you use files that are “.frags” files for ab initio structure prediction. Unfurtunately, all of the google drive files that come with the tutorial are no longer accessible (the link goes to a 404 error).

How do you create these .frags files for your POI? I tried using old robetta, but none of the “fragment” files produced have the .frags extension, nor can any of them be downloaded off of the internet. I would appreciate any help/advice!

[Anonymous]

Hello Kristin!

Thanks for pointing this out!

The PyRosetta notebooks have been updated recently, but it is still not reflected in the website I’m afraid.

Steps 1.1 and 1.2 have been made redundant and have been incorporated into step 1.0 “how to get started”

You can see the first few cells there are related to Google Drive:

http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.00-How-to-Get-Started.ipynb

Let me know if you experience any further issues!

Ziv.

 

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