Installing Rosetta Abinitio make_fragments.pl

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    • September 17, 2009 at 4:20 pm #380
      JianyiYang
      Participant

        Hello,

        I’m trying to install make_fragments.pl for Rosetta Abinitio. Has anyone had problems obtaining all of the elements for SAM?

        The 3.5 version of SAM has:
        target99
        uniqueseq

        but lacks:
        predict-2nd

        Does anyone know where to get SAM bundled with predict-2nd or is this a separate program?

        Thanks,
        Christy

      • September 18, 2009 at 1:53 pm #4191
        Anonymous

          I can’t help you make fragments locally, but I can point out that the Robetta Server’s fragments are perfectly compatible with Rosetta 3.0. (Admittedly that queue is a bit busy right now).

          http://robetta.bakerlab.org/fragmentsubmit.jsp

        • September 18, 2009 at 7:03 pm #4192
          JianyiYang
          Participant

            > Hello,
            >
            > I’m trying to install make_fragments.pl for Rosetta Abinitio. Has anyone had problems obtaining all of the elements for SAM?
            >
            > The 3.5 version of SAM has:
            > target99
            > uniqueseq
            >
            > but lacks:
            > predict-2nd
            >
            > Does anyone know where to get SAM bundled with predict-2nd or is this a separate program?
            >
            > Thanks,
            > Christy

            Thanks for the info on the server. I want to run quite a few structures, so I want to install make_fragments locally.

            We are also having problems with JUFO. Does anyone know what version of JUFO works with Rosetta3.0?

            Thanks,
            Christy

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