Loop Insertion/Extension using rosetta suite

Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Loop Insertion/Extension using rosetta suite

Viewing 1 reply thread
  • Author
    Posts
    • February 28, 2011 at 12:45 pm #809
      Anonymous

        Hi,

        Is there any way to model loop extension or loop insertion using rosetta suite ??

      • March 1, 2011 at 2:55 am #5095
        Anonymous

          What exactly do you want to do?

          If you want to add/subtract residues to loops, then you can manually edit the PDB to have more/fewer residues, then use the “build_initial” option in the loop_modeling executeable to remodel it.

          I’m not sure what “loop insertion” means, but fragment insertion + CCD closure (a standard mode for the loop_modeling executable might do it.

      • Author
        Posts
      Viewing 1 reply thread
      • You must be logged in to reply to this topic.