Loop Modelling: ERROR: switch_to_residue_type_set fails

[Anonymous]

I tried adding the patch files pro_hydroxylated_case21.txt and pro_hydroxylated_case2.txt to
../rosetta_database/chemical/residue_type_sets/centroid directory and also adding the file names to the patches.txt file.

I still get the above error.

Example of patch file:

NAME pro_hydroxylated_case2
TYPES HYDROXYLATION

## general requirements for this patch

BEGIN_SELECTOR
PROPERTY PROTEIN
AA PRO
NOT VARIANT_TYPE HYDROXYLATION
END_SELECTOR

## now we search for a case that matches the residue, take the first one
## so put generic case last

BEGIN_CASE ### THE GENERAL CASE ##########################################

SET_IO_STRING HYP P

END_CASE

[Anonymous]

If I wasn’t clear, the switch from centroid – to – residue-type-set fails.

[Anonymous]

See what happens if you put your structure through score_jd2 with the -out:pdb flag on. What does the output copy of the PDB (specifically, the hydroxyproline) look like?

Also, you have a typo in your listing of the files – it’s case 1 and case 2, not case 21 and case 2. I assume this is an innocent typo in the message board posting, but if your files are really named that way it might cause a problem.

[Author]

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