As per the guide on Kinematic Loop Modeling http://www.rosettacommons.org/manuals/archive/rosetta3.4_user_guide/df/d39/kinematic_loopmodel.html, I am trying to pass -loops:refine_repack_cycles as an option to loopmodel.linuxgccrelease.
However, I get the following error message: ERROR: Option matching -loops:refine_repack_cycles not found in command line top-level context
My complete command line is: loopmodel.linuxgccrelease -database /usr/local/rosetta/3.4/rosetta_database/ -loops:refine refine_kic -loops:outer_cycles 1 -loops:refine_init_temp 1.2 -loops:refine_final_temp 1.2 -loops:vicinity_sampling -loops:vicinity_degree 3 -loops:optimize_only_kic_region_sidechains_after_move -ex1 -ex2 -nstruct 50 -out:prefix aa -in:file:fullatom -in:file:native input.pdb -loops:input_pdb input.pdb -loops:loop_file loop_input.txt -loops:refine_repack_cycles 50
Is there anything else that I should be doing?
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