Output fasta of enzdes generated pdbs

Member Site Forums Rosetta 3 Rosetta 3 – General Output fasta of enzdes generated pdbs

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    • #2200

        Hi everyone,

        I am using enzyme design application to mutate my enzyme. How can I extract a list of the pdb name, residues and residue number from the output generated by Rosetta.

        The sequence recovery does something similar, but i need to know what residues have changed in what position. I am looking for trends hence I need to do this fo a bunch of pdbs that meet my cut off. Is there a quick way of getting a series of fastA files that I can view on any sequence alignment tool or a table ?

        Thanks in advance for your help

      • #11016

          To generate fasta files from PDBs, I’d recommend using the main/source/src/python/apps/public/pdb2fasta.py script provided with Rosetta. Just pass it a list of PDB filenames, and it will output a fasta file representation to the standard output.

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