Output fasta of enzdes generated pdbs

[Anonymous]

Hi everyone,

I am using enzyme design application to mutate my enzyme. How can I extract a list of the pdb name, residues and residue number from the output generated by Rosetta.

The sequence recovery does something similar, but i need to know what residues have changed in what position. I am looking for trends hence I need to do this fo a bunch of pdbs that meet my cut off. Is there a quick way of getting a series of fastA files that I can view on any sequence alignment tool or a table ?

Thanks in advance for your help

[Anonymous]

To generate fasta files from PDBs, I’d recommend using the main/source/src/python/apps/public/pdb2fasta.py script provided with Rosetta. Just pass it a list of PDB filenames, and it will output a fasta file representation to the standard output.

[Author]

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