params_list

[Anonymous]

The following lines from the manual are giving me problems.

>>> params_list = Vector1(‘ATP.params’)
>>> res_set=generate_nonstandard_residue_set(params_list)

This results in an error
ERROR: Cannot find file ‘A’
ERROR:: Exit from: src/core/chemical/residue_io.cc line: 147
RuntimeError: unidentifiable C++ exception

If I rename ATP.params to A, and put it in my home directory it finds it.
It looks like a miscommunication passing the string.

[Anonymous]

This is just a syntax thing. You need to pass a list to Vector1(), so it should be:
>>> params_list = Vector1()

with brackets.

Since you didn’t use brackets, it interprets the whole string as a list of characters; hence it looking for a file called “A”.

Let us know if this still does not work.

[Anonymous]

Try using an explicit Vector1_string and making sure you are passing it a list:

params_paths = utility.vector1_string()
params_paths.extend(list(params.keys()))
residuetypeset = generate_nonstandard_residue_set(params_paths)

[Anonymous]

Vector1()

That did it, thanks.

[Author]

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