Predict the N-terminal of a protein

Member Site Forums Rosetta 3 Rosetta 3 – General Predict the N-terminal of a protein

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    • #691

        I have two proteins as restraint and then predict the N-terminal of one protein which interact the other protein. Which protocol I should use?
        Thanks in advance

      • #4660

          You can try FloppyTail protocol.

        • #4662

            Your question is a little vague – what exactly do you have? Do you have structures of two proteins, which bind to each other through an N-terminal region of one not present in its structure?

            The FloppyTail protocol is intended for sampling space of flexible tail regions, including those which bind some other partner.

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