problem when exact pdb from silent file

[Anonymous]

Hi all,
I got a problem when I tried extracting pdb from silent file in the tutorial in Abinitio Modeling (http://www.rosettacommons.org/manuals/archive/rosetta3.2_user_guide/app_abinitio.html). Actually I got nothing when I tried that command to exact pdb out. And there is no error message coming out, which I thought is very strange.

Best,
Wenchang

[Anonymous]

I’ve already solved the problem but I want to report the several opinions that are used in the manual are wrong:
The original one is:
./bin/score.linuxgccrelease
-database ../rosetta_database
-in:file:silent 1l2y_silent.out
-in:file:fullatom
-output
-rescore:output_only

but the opinion “-output” should be “-out:output”, or you may also want add opinion “-out:pdb”.

[Author]

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