problems with cluster program

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    • April 8, 2010 at 2:45 pm #592
      Anonymous

        Hi,

        When I try to use cluster program to cluster protein strucutres generated by rosetta ab-initio I get the following error:

        ERROR: !pdb.empty()
        ERROR:: Exit from: src/core/io/pdb/pdb_dynamic_reader.cc line: 208

        I used following options:

        cluster.linuxgccrelease -database /opt/rosetta/rosetta_database/
        -in:file:l pdb-list

      • April 16, 2010 at 3:34 pm #4425
        Anonymous

          It looks like the PDB reader thinks your PDBs are empty. Not to be trivial, but are they? What’s in your list pdb-list? (are they in the right directory?)

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