problems with cluster program

Member Site Forums Rosetta 3 Rosetta 3 – General problems with cluster program

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    • #592


        When I try to use cluster program to cluster protein strucutres generated by rosetta ab-initio I get the following error:

        ERROR: !pdb.empty()
        ERROR:: Exit from: src/core/io/pdb/ line: 208

        I used following options:

        cluster.linuxgccrelease -database /opt/rosetta/rosetta_database/
        -in:file:l pdb-list

      • #4425

          It looks like the PDB reader thinks your PDBs are empty. Not to be trivial, but are they? What’s in your list pdb-list? (are they in the right directory?)

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