restrain residues in docking

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    • November 2, 2013 at 3:52 pm #1743
      Anonymous

        Hello:

        I am trying to do protein/protein docking with rosetta. I already know that some residues involved in the binding, and I am just wondering how can I specify in the input file that some of the residues must be included for pose sampling?

        thank you very much.

        best
        Albert

      • November 2, 2013 at 4:48 pm #9460
        Anonymous

          Yes, you can.

          See the SiteConstraint part of the docking manual, and you should be good to go.

          https://www.rosettacommons.org/manuals/archive/rosetta3.5_user_guide/d0/de4/docking_protocol.html

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