Rosetta 3.3 build error in RHEL 6.1

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    • August 2, 2011 at 9:34 am #994
      mmulqueen
      Participant

        Trying to build Rosetta 3.3 on RHEL 6.1 64-bit machine.

        gcc 4.4.5, Python 2.6.6, scons in Rosetta

        admin@computer in rosetta_source: external/scons-local/scons.py -j4 bin mode=release

        blah, blah, blah

        src/protocols/nonlocal/NonlocalAbinitioReader.cc: In static member function ‘static void protocols::nonlocal::NonlocalAbinitioReader::read(const std::string&, utility::vector1 >*)’:
        src/protocols/nonlocal/NonlocalAbinitioReader.cc:112: internal compiler error: Segmentation fault

        Preprocessed source stored into /tmp/ccH7S1Pz.out file, please attach this to your bugreport.
        scons: *** [build/src/release/linux/2.6/64/x86/gcc/protocols/nonlocal/NonlocalAbinitioReader.os] Error 1
        scons: building terminated because of errors.

        Is that because gcc is faulty (vs. 4.3 and 4.5)? Is there is simple solution short of installing a different version of gcc? I’d attach /tmp/ccH7S1Pz.out, but it’s too big.

        Andreas

        Andreas

      • August 2, 2011 at 2:51 pm #5923
        mmulqueen
        Participant

          answering my own question: It might have been a compiler issue. Building Rosetta 3.3 on a RHEL 5.5 64-bit machine with gcc 4.1.2, Python 2.4.3 went without problems.

          Andreas

        • August 2, 2011 at 4:49 pm #5925
          Anonymous

            Hi Andreas, this is due to a bug in GCC 4.4 series. Upgrading to 4.5 or downgrading to 4.3 should resolve it.

            Please see: http://www.rosettacommons.org/node/2274 and http://gcc.gnu.org/bugzilla/show_bug.cgi?id=47478 for more details.

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