Unrecognized Residues in RosettaDock

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    • March 21, 2010 at 2:48 am #610
      Anonymous

        Hi All,
        I am trying to dock a peptide (12AA) onto a protein (structure available in PDB). However, I got the structure for the peptide using MD simulations. The issue is that the peptide ends are N-acetylated (ACE) and C-amidated (NHE). RosettaDock does not recognize these residues. Is there any way I can resolve this case.

        Thanks,
        Regards,
        Mohan

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