why not scoring function in loop model?

[Anonymous]

Dear:
I used the loop protocol to generate ab int loop and I found that there is no scoring information for the loop models and I don’t know how to judge which one would be the best one. Could you please give me some advices? Here is my flag parameters:

-database /soft/rosetta3.1/rosetta_database
-loops
-input_pdb gbss.pdb
-loop_file gbss.loops
-frag_sizes 9 3 1
-frag_files /home/librahoo/Desktop/GBSS1_loop_refine/gb/aagbss109_05.200_v1_3 /home/librahoo/Desktop/GBSS1_loop_refine/gb/aagbss103_05.200_v1_3 none
-build_initial
-remodel quick_ccd
#-refine refine_ccd
#-relax
-in
-file
-fullatom
-out
-nstruct 100
-prefix a1
-file
#-mute core.util.prof
#-no_prof_info_in_silentout

[Anonymous]

If it didn’t put scores in your output PDBs, and it didn’t put scores in a scorefile, then you can generate scores with the score app (score.cc, score.???release). It will load the PDBs and print scores for you. It’s quite fast.

[Author]

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